Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 7.4e-87 323.9 174 100.0
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 9.7e-71 270.4 158 87.3
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 1.7e-27 126.7 135 56.3
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 3.7e-22 109.0 130 46.9
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 1.0e-19 100.9 132 49.2
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 6.6e-19 98.2 80 62.5
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.9e-18 96.7 130 44.6
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 4.3e-18 95.5 129 47.3
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 2.1e-17 93.2 145 42.8
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 2.8e-17 92.8 116 50.0
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 3.6e-17 92.4 131 51.1
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 8.0e-17 91.3 117 45.3
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 1.0e-16 90.9 132 47.0
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 2.3e-16 89.7 117 45.3
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 4.0e-16 89.0 137 43.1
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 6.8e-16 88.2 136 44.9
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 4.4e-15 85.5 129 44.2
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 7.5e-15 84.7 125 44.0
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 9.8e-15 84.3 132 44.7
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 9.8e-15 84.3 128 43.0
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 9.8e-15 84.3 130 46.2
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 2.2e-14 83.2 125 44.8
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 3.7e-14 82.4 125 43.2
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.4e-13 80.5 132 43.9
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 2.4e-13 79.7 144 41.7
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.2e-13 79.3 131 45.0
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 3.2e-13 79.3 130 48.5
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 2.7e-12 76.3 126 39.7
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 2.7e-12 76.3 114 46.5
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 2.7e-12 76.3 129 42.6
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.6e-12 75.5 110 44.5
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.0e-12 75.1 72 54.2
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 1.0e-11 74.3 129 39.5
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.7e-11 73.6 118 41.5
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 1.7e-11 73.6 101 43.6
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 3.0e-11 72.8 130 40.0
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 3.0e-11 72.8 131 40.5
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 3.9e-11 72.4 86 47.7
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 8.6e-11 71.2 127 38.6
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 1.9e-10 70.1 128 39.1
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.5e-10 69.7 129 41.1
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 7.3e-10 68.2 101 38.6
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 9.5e-10 67.8 119 38.7
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.2e-09 67.4 105 41.0
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.2e-09 67.4 72 51.4
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 2.1e-09 66.6 128 39.8
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 3.6e-09 65.9 146 36.3
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.2e-09 65.1 131 38.9
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 6.2e-09 65.1 123 42.3
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.1e-08 64.3 141 36.9
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.4e-08 63.9 131 39.7
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 1.4e-08 63.9 142 38.0
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.8e-08 63.5 118 39.0
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 1.8e-08 63.5 130 37.7
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.8e-08 63.5 130 37.7
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 1.8e-08 63.5 129 41.1
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.0e-08 62.4 131 38.9
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 5.2e-08 62.0 119 37.8
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 6.8e-08 61.6 137 35.8
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 6.8e-08 61.6 119 37.8
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 6.8e-08 61.6 109 38.5
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 8.9e-08 61.2 129 36.4
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 1.5e-07 60.5 126 34.1
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 1.5e-07 60.5 127 37.0
TPR.G36109 Trifolium pratense HOM05D003884 ORTHO05D004482 2.0e-07 60.1 132 35.6
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.4e-07 59.3 120 35.8
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 4.4e-07 58.9 75 42.7
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 5.8e-07 58.5 126 36.5
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 7.5e-07 58.2 130 36.2
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 3.7e-06 55.8 139 37.4
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.7e-06 55.8 131 33.6
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 6.4e-06 55.1 136 35.3
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 8.3e-06 54.7 99 34.3
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 8.3e-06 54.7 34 70.6


User provided reference genes

Program Settings