Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.2e-278 961.1 476 100.0
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.0e-277 956.4 477 99.8
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.0e-272 941.8 476 98.3
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.6e-232 809.3 483 83.4
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 2.2e-226 788.9 490 81.6
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 2.3e-223 778.9 483 80.1
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.3e-223 778.9 484 79.5
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.9e-223 778.1 484 81.4
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 4.0e-220 768.1 482 77.2
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 4.0e-220 768.1 482 77.2
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 4.5e-219 764.6 483 78.1
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.8e-218 761.5 485 78.1
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 5.5e-217 757.7 483 77.0
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.7e-216 755.4 483 76.2
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.0e-215 753.4 483 77.2
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 3.0e-215 751.9 482 75.9
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 3.0e-215 751.9 469 81.2
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 8.7e-215 750.4 483 75.6
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.6e-213 746.1 477 76.3
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 3.7e-213 745.0 482 76.6
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.1e-212 743.4 483 75.8
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.4e-212 743.0 483 74.7
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 2.4e-212 742.3 483 75.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 5.3e-212 741.1 483 75.2
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.9e-212 740.7 481 74.2
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.2e-211 740.0 485 75.7
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.6e-211 738.8 483 75.2
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 4.5e-211 738.0 483 75.8
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 5.8e-211 737.6 484 76.0
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 2.2e-210 735.7 510 71.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.2e-210 735.7 483 75.2
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.4e-209 733.0 483 75.2
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 7.1e-209 730.7 482 75.5
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 6.0e-208 727.6 483 75.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 6.0e-208 727.6 476 75.0
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.0e-207 726.9 477 74.6
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 3.0e-207 725.3 476 75.2
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.9e-206 722.6 483 72.9
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 3.3e-206 721.8 478 73.4
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 4.3e-206 721.5 476 73.3
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.7e-206 721.1 483 73.7
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 7.4e-206 720.7 476 73.3
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 9.6e-206 720.3 476 73.5
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.6e-205 719.5 476 72.9
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 6.3e-205 717.6 483 75.2
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.4e-204 716.5 484 72.9
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 3.1e-204 715.3 477 73.6
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.1e-204 714.9 476 73.9
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 4.1e-204 714.9 480 75.8
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 4.1e-204 714.9 479 74.7
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 5.3e-204 714.5 482 75.1
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 6.9e-204 714.1 483 74.5
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 9.0e-204 713.8 476 71.8
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.6e-203 712.2 487 71.5
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.6e-203 712.2 483 72.3
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 5.9e-203 711.1 479 73.7
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 5.9e-203 711.1 476 73.1
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.3e-202 709.9 484 72.7
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.3e-202 709.9 476 73.3
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.3e-202 709.9 442 77.1
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.8e-202 708.4 475 72.4
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 6.5e-202 707.6 487 71.3
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 8.4e-202 707.2 499 69.9
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 2.5e-201 705.7 484 72.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.5e-200 701.8 483 70.8
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 3.5e-200 701.8 483 71.0
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 7.9e-200 700.7 483 72.0
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 3.9e-199 698.4 483 71.2
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 3.9e-199 698.4 484 70.5
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 6.7e-199 697.6 484 70.9
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 8.7e-199 697.2 476 72.1
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.3e-197 693.3 496 70.0
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 2.2e-197 692.6 477 71.3
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 6.3e-197 691.0 484 69.8
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 3.1e-196 688.7 484 70.7
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 5.3e-196 688.0 477 70.4
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 9.0e-196 687.2 520 66.3
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 2.0e-195 686.0 477 70.0
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.7e-195 684.1 507 68.0
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 7.7e-195 684.1 476 72.1
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.7e-194 682.9 480 69.8
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 5.0e-194 681.4 569 61.9
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.4e-193 679.9 480 69.2
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.4e-193 679.9 477 69.8
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 2.5e-193 679.1 476 70.0
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 5.5e-193 677.9 477 69.8
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.2e-192 676.8 477 69.0
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 2.1e-192 676.0 479 70.1
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 2.7e-192 675.6 477 69.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 2.7e-192 675.6 477 69.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.4e-191 673.3 486 67.9
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.1e-190 670.2 481 68.6
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 7.4e-190 667.5 501 66.7
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 7.4e-190 667.5 489 70.6
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.8e-189 665.6 476 69.3
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.5e-187 659.8 460 72.0
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 6.5e-186 654.4 488 68.6
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 6.5e-186 654.4 475 67.2
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.4e-185 653.3 415 75.9
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.2e-184 650.2 486 66.9
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.2e-184 650.2 475 67.4
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 2.3e-183 646.0 432 75.0
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.7e-181 639.8 475 66.5
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.1e-180 637.1 495 63.8
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.6e-179 633.3 552 61.8
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.0e-179 632.9 428 71.7
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 3.5e-179 632.1 517 63.4
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.7e-176 621.7 415 73.3
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 4.5e-171 605.1 476 64.3
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.8e-170 602.1 486 60.5
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 7.2e-169 597.8 485 63.9
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.4e-166 589.0 413 73.8
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 7.5e-166 587.8 473 61.1
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 5.9e-163 578.2 413 70.2
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 2.2e-162 576.2 492 58.9
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 5.0e-162 575.1 482 59.5
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.3e-145 519.2 357 72.5
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 5.8e-142 508.4 490 56.5
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 2.1e-136 490.0 483 54.2
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 4.2e-100 369.4 251 69.3
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.9e-98 362.8 598 38.1
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 3.4e-94 349.7 517 41.2
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 4.9e-93 345.9 258 67.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 5.3e-87 325.9 213 78.9
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.5e-78 296.2 182 73.1
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.6e-75 287.7 210 63.3
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.8e-74 284.3 255 56.1
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 3.9e-74 283.1 381 47.2
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.7e-72 277.7 539 34.5
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.4e-66 258.1 188 76.1
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.4e-63 248.1 182 63.7
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.3e-63 246.1 250 53.6
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.6e-54 218.0 474 32.1
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.7e-48 198.0 171 61.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-47 194.5 432 33.8
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 5.7e-41 172.9 383 33.4
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.1e-39 168.7 423 29.3
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.4e-39 168.3 448 29.0
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-33 148.7 212 44.3
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.1e-31 140.2 218 39.9
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 3.7e-24 117.1 187 43.9
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.8e-18 98.2 69 75.4
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.2e-17 95.5 132 40.9
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.6e-17 94.4 69 71.0
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.9e-12 78.2 70 62.9
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 4.4e-09 67.0 107 39.3
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 4.4e-09 67.0 70 52.9
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 5.8e-09 66.6 69 53.6
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.9e-08 64.3 84 51.2
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.4e-07 62.0 70 50.0


User provided reference genes

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