Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.9e-163 577.8 302 100.0
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 6.1e-97 358.2 329 68.1
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 6.8e-80 301.6 319 59.9
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.0e-76 290.0 342 57.0
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 2.3e-75 286.6 319 58.6
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 5.6e-74 282.0 276 61.6
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 7.3e-74 281.6 323 55.7
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 3.6e-73 279.3 306 56.9
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 6.2e-73 278.5 331 54.4
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 1.5e-71 273.9 280 59.6
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 2.9e-70 269.6 324 55.6
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 3.7e-70 269.2 307 56.4
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 3.7e-70 269.2 307 56.4
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 4.9e-70 268.9 322 54.0
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 2.4e-69 266.5 356 51.4
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 3.2e-69 266.2 326 53.7
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 2.0e-68 263.5 318 53.8
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 4.6e-68 262.3 322 52.5
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 1.0e-67 261.2 323 53.9
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 1.3e-67 260.8 322 52.5
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 3.0e-67 259.6 322 52.2
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 2.5e-66 256.5 317 53.6
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 2.5e-66 256.5 294 53.1
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 5.6e-66 255.4 309 54.7
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 7.3e-66 255.0 306 51.6
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 9.5e-66 254.6 310 54.5
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.6e-65 253.8 322 52.5
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.6e-65 253.8 322 54.3
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.8e-65 253.1 321 53.9
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 8.1e-65 251.5 308 54.2
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 4.0e-64 249.2 322 53.4
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.2e-63 247.7 311 53.7
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 1.5e-63 247.3 309 53.7
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 1.5e-63 247.3 331 52.0
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 2.0e-63 246.9 321 52.0
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 5.8e-63 245.4 303 51.2
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 7.5e-63 245.0 305 53.4
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 7.5e-63 245.0 320 51.9
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.3e-62 244.2 253 59.7
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.7e-62 243.8 331 51.4
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 2.2e-62 243.4 312 52.6
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 3.7e-62 242.7 319 51.7
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 4.9e-62 242.3 310 51.9
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 8.3e-62 241.5 320 52.2
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.4e-61 240.0 320 51.9
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 7.1e-61 238.4 266 55.6
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 9.2e-61 238.0 320 50.0
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 1.2e-60 237.7 300 52.7
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 1.6e-60 237.3 321 51.4
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 2.1e-60 236.9 323 50.8
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 2.7e-60 236.5 320 49.4
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 3.5e-60 236.1 320 51.2
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.0e-59 234.6 263 55.1
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.3e-59 234.2 267 55.1
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 2.3e-59 233.4 301 50.8
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 2.3e-59 233.4 302 51.7
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 3.0e-59 233.0 240 59.2
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 3.0e-59 233.0 267 54.3
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.0e-59 233.0 313 50.2
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 3.9e-59 232.6 311 49.5
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 3.9e-59 232.6 256 55.9
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 5.1e-59 232.3 257 56.4
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 8.6e-59 231.5 354 46.9
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 8.6e-59 231.5 271 53.5
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.5e-58 230.7 354 46.9
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 4.3e-58 229.2 321 50.2
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 9.5e-58 228.0 319 48.3
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 9.5e-58 228.0 308 48.4
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 9.5e-58 228.0 257 55.3
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 1.2e-57 227.6 255 54.5
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 1.6e-57 227.3 325 49.5
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.6e-57 227.3 308 50.3
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 2.1e-57 226.9 322 50.0
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 2.8e-57 226.5 243 54.3
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.7e-57 225.7 306 47.1
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 1.1e-56 224.6 322 50.6
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 1.5e-55 220.7 321 45.2
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 2.0e-55 220.3 327 48.3
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 2.0e-55 220.3 327 48.3
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 3.4e-55 219.5 257 54.5
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 4.4e-55 219.2 305 48.5
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 5.8e-55 218.8 277 53.4
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 7.6e-55 218.4 308 48.4
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 2.2e-54 216.9 328 46.6
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.9e-54 216.5 329 46.5
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 6.4e-54 215.3 315 47.0
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 6.4e-54 215.3 315 47.0
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 3.2e-53 213.0 308 47.1
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 5.4e-53 212.2 308 47.4
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 7.1e-53 211.8 347 45.5
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 7.1e-53 211.8 331 46.8
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.2e-52 211.1 241 53.5
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 4.6e-52 209.1 309 47.6
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 4.6e-52 209.1 322 46.0
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 7.8e-52 208.4 301 46.5
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 1.7e-51 207.2 322 45.7
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 5.1e-51 205.7 328 45.7
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.1e-50 204.5 262 50.0
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 1.1e-50 204.5 191 60.2
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.1e-50 204.5 255 52.5
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 1.5e-50 204.1 264 51.1
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 4.3e-50 202.6 254 52.0
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 5.6e-50 202.2 304 45.4
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 7.3e-50 201.8 338 44.1
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 9.6e-50 201.4 259 48.3
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 1.2e-49 201.1 237 51.5
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 3.6e-49 199.5 241 50.6
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 3.6e-49 199.5 342 43.9
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 4.7e-49 199.1 307 45.6
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.4e-48 197.6 249 49.4
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 3.1e-48 196.4 302 44.0
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 1.7e-46 190.7 258 47.3
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 5.4e-45 185.7 254 48.4
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 9.3e-45 184.9 230 48.3
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 9.3e-45 184.9 315 41.9
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 2.7e-44 183.3 219 55.3
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 3.0e-43 179.9 230 47.8
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 6.4e-38 162.2 320 40.9
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.7e-35 154.1 172 55.2
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 3.9e-35 152.9 187 51.3
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 8.7e-35 151.8 192 46.9
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 1.1e-34 151.4 187 50.8
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 1.9e-34 150.6 327 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 9.0e-32 141.7 340 35.0
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 2.0e-31 140.6 196 46.4
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 7.6e-31 138.7 314 34.4
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 1.9e-29 134.0 190 50.5
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 4.2e-29 132.9 307 36.5
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 9.3e-29 131.7 354 33.9
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.3e-25 121.3 163 50.9
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 6.0e-20 102.4 158 45.6
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.8e-17 92.8 157 42.7
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 4.8e-17 92.8 127 52.8
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 1.8e-16 90.9 76 67.1
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 6.9e-16 89.0 149 43.6
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 4.5e-15 86.3 207 32.9
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.9e-13 80.9 155 43.9
CSS0012251 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D006043 5.5e-13 79.3 141 43.3
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 6.9e-08 62.4 125 37.6
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.5e-07 61.2 85 45.9


User provided reference genes

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