Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 2.7e-100 369.0 234 100.0
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 7.6e-95 350.9 168 100.0
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 1.6e-65 253.4 256 64.1
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 4.8e-65 251.9 256 64.5
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.8e-64 250.0 258 71.3
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.8e-64 250.0 308 55.2
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 9.0e-64 247.7 256 70.3
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.5e-63 246.9 256 69.9
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 4.5e-63 245.4 189 69.3
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 7.6e-63 244.6 256 55.9
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 7.6e-63 244.6 256 69.1
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 1.0e-62 244.2 187 70.6
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 1.0e-62 244.2 185 71.9
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 1.3e-62 243.8 256 63.3
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 2.9e-62 242.7 256 62.1
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 6.5e-62 241.5 185 71.4
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 1.4e-61 240.4 190 67.9
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.5e-61 239.6 281 57.3
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 3.2e-61 239.2 256 62.5
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 3.2e-61 239.2 190 66.8
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 3.2e-61 239.2 256 64.5
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 4.2e-61 238.8 190 67.9
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 5.5e-61 238.4 256 59.4
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 1.2e-60 237.3 255 60.8
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 1.6e-60 236.9 257 66.5
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.1e-60 236.5 256 63.3
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 2.7e-60 236.1 188 68.6
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 3.5e-60 235.7 257 66.5
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 3.5e-60 235.7 257 61.5
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 4.6e-60 235.3 190 67.4
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 4.6e-60 235.3 190 67.4
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 4.6e-60 235.3 190 67.4
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 6.0e-60 235.0 257 63.4
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 7.9e-60 234.6 190 67.4
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 1.0e-59 234.2 188 67.6
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 1.0e-59 234.2 189 67.2
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 1.0e-59 234.2 189 67.2
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.8e-59 233.4 256 69.9
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 1.8e-59 233.4 256 69.5
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 3.9e-59 232.3 190 67.4
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 8.7e-59 231.1 190 65.3
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 1.1e-58 230.7 190 65.8
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 1.1e-58 230.7 256 59.8
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.5e-58 230.3 190 67.4
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 1.5e-58 230.3 256 62.9
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 1.5e-58 230.3 188 67.6
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 2.5e-58 229.6 190 64.7
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 2.5e-58 229.6 190 64.2
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 3.3e-58 229.2 256 65.2
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 4.3e-58 228.8 190 64.7
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 7.4e-58 228.0 255 65.1
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 9.6e-58 227.6 190 64.2
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 1.3e-57 227.3 256 64.1
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 1.3e-57 227.3 187 65.2
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 1.3e-57 227.3 187 66.8
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 1.6e-57 226.9 255 63.1
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 2.8e-57 226.1 255 65.5
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 2.8e-57 226.1 285 55.1
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 3.7e-57 225.7 255 61.2
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 1.4e-56 223.8 255 53.3
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 1.4e-56 223.8 190 61.6
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 1.8e-56 223.4 188 64.9
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 2.4e-56 223.0 255 61.6
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 5.3e-56 221.9 190 63.2
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 5.3e-56 221.9 198 62.1
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 6.9e-56 221.5 255 63.1
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.2e-55 220.7 190 62.6
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.0e-55 219.9 221 56.1
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 2.6e-55 219.5 176 67.6
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 2.6e-55 219.5 185 65.4
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 4.5e-55 218.8 255 60.0
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.3e-54 217.2 255 59.6
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 1.7e-54 216.9 176 66.5
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 3.8e-54 215.7 257 56.4
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.1e-53 214.2 176 64.8
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 4.2e-53 212.2 175 64.6
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 1.2e-52 210.7 169 65.7
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.6e-52 210.3 189 61.4
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 2.7e-52 209.5 283 56.2
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.6e-52 209.1 302 44.4
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.8e-51 206.8 187 61.0
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 1.5e-50 203.8 314 47.1
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 1.3e-49 200.7 220 54.1
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 5.9e-47 191.8 169 59.8
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 1.9e-45 186.8 188 53.7
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 4.2e-45 185.7 204 53.4
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 4.2e-45 185.7 177 57.6
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 1.6e-44 183.7 159 63.5
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.6e-44 183.7 151 65.6
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 1.8e-43 180.3 195 51.8
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 2.3e-43 179.9 161 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 8.8e-43 177.9 191 50.8
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 8.2e-41 171.4 151 59.6
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 9.1e-40 167.9 207 49.8
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 8.5e-38 161.4 179 53.6
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 8.5e-38 161.4 173 71.7
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 2.7e-36 156.4 286 39.9
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 5.2e-35 152.1 195 45.6
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 2.8e-33 146.4 356 32.6
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.3e-30 137.5 160 49.4
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.2e-30 136.7 131 59.5
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 2.2e-30 136.7 172 47.7
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 3.8e-30 136.0 137 56.2
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 1.9e-29 133.7 115 59.1
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 2.8e-25 119.8 107 60.7
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 1.6e-23 114.0 102 58.8
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 4.5e-23 112.5 99 59.6
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.0e-22 111.3 106 59.4
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 1.3e-22 110.9 78 66.7
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 5.0e-22 109.0 145 48.3
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 1.9e-21 107.1 111 53.2
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 2.1e-20 103.6 92 59.8
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 5.4e-16 89.0 126 61.1
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 2.0e-10 70.5 37 89.2
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 2.2e-09 67.0 33 87.9
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.8e-08 63.9 32 93.8
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 4.1e-08 62.8 37 78.4


User provided reference genes

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