Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 0.0e+00 1708.7 866 100.0
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1354.0 881 79.3
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1337.8 914 76.3
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 0.0e+00 1325.5 877 78.0
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 0.0e+00 1300.0 884 75.2
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 0.0e+00 1173.7 880 70.2
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 0.0e+00 1127.1 747 77.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 2.3e-306 1055.4 884 62.9
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.3e-304 1047.3 880 63.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 4.1e-303 1044.6 881 63.1
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.9e-300 1035.8 876 63.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 3.6e-299 1031.6 869 62.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.3e-298 1028.9 882 60.3
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 6.9e-295 1017.3 863 60.8
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 5.9e-294 1014.2 882 60.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 5.5e-292 1007.7 885 61.0
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 3.6e-291 1005.0 882 60.3
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.8e-290 1002.7 877 59.6
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 7.0e-287 990.7 877 58.8
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.6e-286 989.6 883 59.6
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 3.5e-286 988.4 881 58.9
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 4.5e-286 988.0 881 60.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.7e-285 986.1 883 59.0
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.7e-285 986.1 881 59.9
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 6.5e-285 984.2 882 60.0
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.2e-284 981.5 882 60.8
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 9.4e-284 980.3 884 59.4
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.2e-283 979.9 884 59.5
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.1e-283 979.2 884 59.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.4e-282 976.5 883 59.2
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.3e-282 975.7 857 62.4
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.2e-281 973.4 882 60.7
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 8.2e-280 967.2 877 58.3
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 9.4e-276 953.7 877 59.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.1e-275 952.6 883 58.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.6e-275 951.8 875 59.3
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 8.0e-275 950.7 883 58.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.4e-271 939.1 748 65.2
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.1e-267 926.0 921 57.1
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 3.4e-265 918.7 836 58.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.9e-264 914.8 887 55.9
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.3e-261 906.7 885 54.5
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 9.5e-260 900.6 649 72.6
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.6e-259 898.7 880 54.3
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 6.1e-259 897.9 882 55.2
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.0e-258 897.1 882 55.6
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.4e-257 892.1 900 55.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 3.0e-253 879.0 888 52.6
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 8.6e-253 877.5 938 53.8
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.9e-252 876.3 947 51.7
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 5.6e-252 874.8 884 53.2
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 7.3e-252 874.4 884 53.2
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 6.2e-251 871.3 947 51.7
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 4.4e-249 865.1 884 52.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.8e-249 864.8 851 56.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.4e-247 859.4 878 52.7
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 4.6e-246 855.1 871 53.0
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 6.6e-245 851.3 882 52.9
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 6.6e-245 851.3 882 52.7
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 8.1e-243 844.3 891 52.9
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-242 844.0 880 52.5
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 5.2e-242 841.6 867 51.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.3e-240 837.0 866 55.1
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.7e-240 836.6 906 51.0
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 5.4e-239 831.6 901 50.4
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.3e-236 822.0 880 49.2
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 4.7e-235 818.5 730 61.4
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 8.9e-234 814.3 884 51.4
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.3e-232 810.4 880 49.1
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.3e-232 810.4 699 59.9
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.9e-232 808.5 835 52.9
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.0e-229 799.3 900 49.2
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 2.5e-228 796.2 884 49.1
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-226 790.4 935 49.0
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 8.4e-224 781.2 881 48.6
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.4e-223 779.6 885 50.1
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.4e-223 779.6 883 51.0
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.3e-223 777.7 843 51.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.9e-220 770.0 884 47.6
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 8.1e-219 764.6 697 57.8
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 1.1e-218 764.2 881 47.2
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.4e-218 763.8 885 48.2
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.9e-216 756.1 732 55.5
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 3.8e-216 755.7 885 46.8
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 3.2e-215 752.7 885 46.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.8e-213 746.9 904 48.0
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 8.7e-213 744.6 885 46.2
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 3.3e-212 742.7 885 46.6
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 5.6e-212 741.9 884 45.7
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 5.6e-212 741.9 887 47.9
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 7.4e-212 741.5 882 47.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 6.2e-211 738.4 874 48.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.4e-210 737.3 622 60.9
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.2e-206 724.2 710 55.5
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.0e-205 721.1 796 48.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.6e-204 715.3 843 49.1
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.5e-201 705.7 882 46.4
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 6.5e-200 701.8 667 55.8
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 3.0e-197 693.0 704 54.1
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 6.3e-195 685.3 876 46.6
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 6.9e-194 681.8 892 44.8
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.0e-189 667.9 894 44.3
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.4e-180 636.0 706 52.0
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.7e-171 607.4 875 42.1
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 4.7e-166 589.3 641 50.4
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.4e-165 587.8 687 45.6
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 1.1e-151 541.6 776 41.6
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.5e-151 541.2 736 43.1
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.4e-146 524.6 555 52.8
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-145 521.5 917 38.5
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.6e-134 483.4 891 35.8
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 6.2e-126 456.1 689 40.3
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.9e-125 452.2 546 43.8
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.2e-121 441.8 757 38.8
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 2.1e-121 441.0 580 43.4
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.2e-114 417.2 261 82.4
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 8.7e-104 382.5 236 83.1
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.0e-101 373.6 228 84.2
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 2.5e-95 354.4 826 32.2
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.2e-90 337.0 965 29.4
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.2e-90 337.0 965 29.4
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.1e-89 334.7 937 29.2
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.7e-89 334.3 236 71.2
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 3.7e-86 323.9 730 31.5
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 5.3e-85 320.1 192 85.9
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 6.9e-85 319.7 558 38.9
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-79 302.4 579 34.0
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 4.8e-78 297.0 191 79.1
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 6.9e-77 293.1 195 72.3
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 6.7e-72 276.6 193 71.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.7e-70 271.9 353 41.6
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 5.3e-69 266.9 187 68.4
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.7e-65 253.8 314 44.6
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 4.5e-60 237.3 752 27.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 5.9e-60 236.9 267 52.4
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.5e-58 230.3 236 49.2
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 2.0e-55 221.9 232 52.6
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 4.4e-55 220.7 143 81.8
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.1e-50 206.1 215 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.2e-49 202.6 333 37.8
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.5e-47 193.4 230 46.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 2.2e-46 191.8 183 54.6
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.8e-45 188.7 143 70.6
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.9e-42 178.7 219 45.7
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.2e-42 176.8 238 45.4
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.6e-39 168.3 108 77.8
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.8e-38 164.1 186 47.8
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 5.9e-36 157.1 181 45.9
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.4e-31 141.4 336 32.4
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 2.2e-30 138.7 84 85.7
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 2.3e-27 128.6 97 66.0
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 6.6e-27 127.1 96 65.6
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.1e-26 126.3 96 71.9
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.3e-22 112.8 110 55.5
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.4e-21 109.4 188 36.2
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 4.1e-21 107.8 185 38.4
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 7.0e-21 107.1 157 36.9
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.5e-18 99.4 114 47.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 3.1e-16 91.7 172 36.6
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 6.0e-12 77.4 115 35.7
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 5.6e-10 70.9 50 66.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-08 65.9 76 46.1
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 5.8e-07 60.8 153 31.4
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.9e-07 60.1 85 37.6


User provided reference genes

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