Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019010 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D111028 1.3e-69 266.2 129 100.0
Rhsim03G0221000 Rhododendron simsii HOM05D000049 ORTHO05D000027 1.7e-08 63.2 33 90.9
Aa31LG11G12600 Aethionema arabicum HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
ATR0829G130 Amborella trichopoda HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
AL3G12730 Arabidopsis lyrata HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
AL6G28080 Arabidopsis lyrata HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
AT3G03120 Arabidopsis thaliana HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
AT5G17060 Arabidopsis thaliana HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
BcaC05g30521 Brassica carinata HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
A05p44060 Brassica napus HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
C05p63680 Brassica napus HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
BolC5t35037H Brassica oleracea HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
BraSC90t46705Z Brassica rapa HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
Carub.0003s0227 Capsella rubella HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
Carub.0006s1524 Capsella rubella HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
CARHR077140 Cardamine hirsuta HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
CARHR196120 Cardamine hirsuta HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
Ca_24448_v3 Cicer arietinum L. HOM05D002636 ORTHO05D003490 5.0e-08 61.6 46 67.4
Thhalv10014746m.g Eutrema salsugineum HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
Thhalv10021569m.g Eutrema salsugineum HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
Sp3g02160 Schrenkiella parvula HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
Sp6g27100 Schrenkiella parvula HOM05D000049 ORTHO05D000027 5.0e-08 61.6 49 65.3
Aa31LG5G13600 Aethionema arabicum HOM05D000049 ORTHO05D000027 6.6e-08 61.2 51 62.7
BcaB08g36807 Brassica carinata HOM05D000049 ORTHO05D000027 6.6e-08 61.2 50 62.0
A06p26260 Brassica napus HOM05D000049 ORTHO05D000027 8.6e-08 60.8 49 63.3
BNapus_Darmor_BZH_scaffold_78p00010 Brassica napus HOM05D000049 ORTHO05D000027 8.6e-08 60.8 49 63.3
BraA01t04591Z Brassica rapa HOM05D000049 ORTHO05D000027 8.6e-08 60.8 49 63.3
BcaC04g18835 Brassica carinata HOM05D000049 ORTHO05D000027 1.1e-07 60.5 37 81.1
A10p22290 Brassica napus HOM05D000049 ORTHO05D000027 1.1e-07 60.5 37 81.1
C09p60110 Brassica napus HOM05D000049 ORTHO05D000027 1.1e-07 60.5 37 81.1
BolC9t58846H Brassica oleracea HOM05D000049 ORTHO05D000027 1.1e-07 60.5 37 81.1
BraA10t44288Z Brassica rapa HOM05D000049 ORTHO05D000027 1.1e-07 60.5 37 81.1
Mapoly0013s0061 Marchantia polymorpha HOM05D000049 ORTHO05D000027 1.1e-07 60.5 49 63.3
Pp3c12_9900 Physcomitrium patens HOM05D000049 ORTHO05D000027 1.1e-07 60.5 49 63.3
Pp3c13_24080 Physcomitrium patens HOM05D000049 ORTHO05D000027 1.1e-07 60.5 49 63.3
Pp3c3_20930 Physcomitrium patens HOM05D000049 ORTHO05D000027 1.1e-07 60.5 49 63.3
PRCOL_00006059 Prasinoderma coloniale HOM05D000049 ORTHO05D000027 1.1e-07 60.5 49 63.3
SEGI_26659 Sequoiadendron giganteum HOM05D000049 ORTHO05D000027 1.1e-07 60.5 74 50.0
Oeu005322.1 Olea europaea HOM05D000049 ORTHO05D000027 1.5e-07 60.1 45 68.9
Os10g0580200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D000027 1.5e-07 60.1 49 63.3
Zm00001eb025390 Zea mays HOM05D000049 ORTHO05D000027 1.5e-07 60.1 49 63.3
AagrBONN_evm.TU.Sc2ySwM_117.3374 Anthoceros agrestis HOM05D000049 ORTHO05D000027 1.9e-07 59.7 42 71.4
Atru.chr12.1988 Acer truncatum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Actinidia18699 Actinidia chinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Actinidia28264 Actinidia chinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Aqoxy323s001 Aquilegia oxysepala HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Aqoxy3G02079 Aquilegia oxysepala HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
arahy.Tifrunner.gnm1.ann1.9M0J49 Arachis hypogaea HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
arahy.Tifrunner.gnm1.ann1.K4ZQMQ Arachis hypogaea HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
arahy.Tifrunner.gnm1.ann1.NJD6NB Arachis hypogaea HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
MSTRG.12 Avicennia marina HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
EL10Ac3g05090 Beta vulgaris HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CSS0000507 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CSS0001997 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CANSAT21G1146 Cannabis sativa HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CAN.G65.132 Capsicum annuum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Cpa.g.c29397 Carica papaya HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CiPaw.05G238600 Carya illinoinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CiPaw.06G019300 Carya illinoinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CDE11G0038 Ceratophyllum demersum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
AUR62005906 Chenopodium quinoa HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
AUR62028161 Chenopodium quinoa HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Ca_04926_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Ciclev10022381m.g Citrus clementina HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Cc02_g00360 Coffea canephora HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
MELO3C005422.2 Cucumis melo HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CsaV3_5G005360 Cucumis sativus L. HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
DCAR_009004 Daucus carota HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Dinv29166 Davidia involucrata HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Duzib177G0172 Durio zibethinus HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
ECA232G2564 Erigeron canadensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Migut.F00950 Erythranthe guttata HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Eucgr.A02963 Eucalyptus grandis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
FvH4_7g33830 Fragaria vesca HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
FAN03G3197 Fragaria x ananassa HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
FAN10G0531 Fragaria x ananassa HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Glyma.11G011800 Glycine max HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Glyma.11G092300 Glycine max HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Glyma.12G018600 Glycine max HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Gohir.A08G222800 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Gohir.A11G303700 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Gohir.D08G243100 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Gohir.D11G319000 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Gorai.004G259000 Gossypium raimondii HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Gorai.007G349000 Gossypium raimondii HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
HanXRQChr04g0111721 Helianthus annuus HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Lsat_1_v5_gn_9_47381 Lactuca sativa HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Lj1C1033G7 Lonicera japonica HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Lj3g0005959 Lotus japonicus HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
LjContig00222g0019841 Lotus japonicus HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Lalb_Chr01g0000991 Lupinus albus HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Lalb_Chr03g0024431 Lupinus albus HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
MD01G1234300 Malus domestica HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Manes.08G163500 Manihot esculenta HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Manes.09G124500 Manihot esculenta HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Medtr4g077640 Medicago truncatula HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Medtr5g007810 Medicago truncatula HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
MCO05G277 Micromonas commoda HOM05D000049 ORTHO05D000027 2.5e-07 59.3 49 61.2
Nn1g01967 Nelumbo nucifera HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Nitab4.5_0000115g0390 Nicotiana tabacum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Nitab4.5_0005081g0020 Nicotiana tabacum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Os02g0699300 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
PSO063G5686 Papaver somniferum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
PSO782G2842 Papaver somniferum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Peaxi162Scf00815g00342 Petunia axillaris HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Phvul.002G038400 Phaseolus vulgaris HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Phvul.011G021000 Phaseolus vulgaris HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Psat7g171640 Pisum sativum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Potri.013G088800 Populus trichocarpa HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Potri.019G052200 Populus trichocarpa HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Prupe.2G324600 Prunus persica HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
PGR142G3036 Punica granatum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
QL09p024744 Quercus lobata HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
RcHm_v2.0_Chr1g0383941 Rosa chinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
RcHm_v2.0_Chr6g0246171 Rosa chinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Sabra13G0069400 Salix brachista HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Sabra19G0056600 Salix brachista HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
SalBow2G2631 Salvia bowleyana HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
SHI02469 Sapria himalayana HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Sed0017778 Sechium edule HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Sed0024691 Sechium edule HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Sc13g0010820 Simmondsia chinensis HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Solyc03g096910.3 Solanum lycopersicum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Solyc06g072800.4 Solanum lycopersicum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Sopen03g027660 Solanum pennellii HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Sopen06g029180 Solanum pennellii HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
PGSC0003DMG400000536 Solanum tuberosum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
PGSC0003DMG401027033 Solanum tuberosum HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
THA.LOC104802915 Tarenaya hassleriana HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
THA.LOC104827219 Tarenaya hassleriana HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Thecc.05G211700 Theobroma cacao HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
TPR.G34271 Trifolium pratense HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
TPR.G37947 Trifolium pratense HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
TWI34G1003 Tripterygium wilfordii HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
TAR629G2590 Trochodendron aralioides HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
VMungo1043G0001 Vigna mungo HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
VMungo1127G0917 Vigna mungo HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
GSVIVG01000224001 Vitis vinifera HOM05D000049 ORTHO05D000027 2.5e-07 59.3 81 37.0
GSVIVG01024420001 Vitis vinifera HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
Zm00001eb251580 Zea mays HOM05D000049 ORTHO05D000027 2.5e-07 59.3 42 71.4
CBR_g21244 Chara braunii HOM05D000049 ORTHO05D000027 3.3e-07 58.9 37 78.4
Cre12.g487850 Chlamydomonas reinhardtii HOM05D000049 ORTHO05D000027 3.3e-07 58.9 49 61.2
MD07G1306800 Malus domestica HOM05D000049 ORTHO05D000027 3.3e-07 58.9 42 71.4
SMO143G0329 Selaginella moellendorffii HOM05D000049 ORTHO05D000027 3.3e-07 58.9 49 61.2
SEGI_22645 Sequoiadendron giganteum HOM05D000049 ORTHO05D000027 3.3e-07 58.9 37 78.4
Rhsim09G0212200 Rhododendron simsii HOM05D000049 ORTHO05D000027 5.6e-07 58.2 30 93.3
Hund09777 Selenicereus undatus HOM05D000049 ORTHO05D000027 5.6e-07 58.2 30 93.3
vmacro10185 Vaccinium macrocarpon HOM05D000049 ORTHO05D000027 5.6e-07 58.2 30 93.3
Zm00001eb231060 Zea mays HOM05D000049 ORTHO05D000027 5.6e-07 58.2 50 56.0
Glyma.01G229000 Glycine max HOM05D000049 ORTHO05D000027 7.3e-07 57.8 42 69.0
Os02g0128600 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D000027 9.5e-07 57.4 49 57.1
COL.COLO4_32834 Corchorus olitorius HOM05D000049 ORTHO05D000027 1.2e-06 57.0 40 72.5
BcaC05g30522 Brassica carinata HOM05D000049 ORTHO05D000027 1.6e-06 56.6 40 70.0
Dinv17264 Davidia involucrata HOM05D000049 ORTHO05D000027 1.6e-06 56.6 40 70.0
Duzib106G1206 Durio zibethinus HOM05D000049 ORTHO05D000027 1.6e-06 56.6 40 70.0
Oeu062812.1 Olea europaea HOM05D000049 ORTHO05D000027 1.6e-06 56.6 40 70.0
CAN.G303.75 Capsicum annuum HOM05D000049 ORTHO05D000027 2.1e-06 56.2 40 67.5
PSO675G7131 Papaver somniferum HOM05D000049 ORTHO05D000027 2.1e-06 56.2 50 54.0
Zm00001eb188070 Zea mays HOM05D000049 ORTHO05D000027 2.1e-06 56.2 42 69.0
Os06g0114200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D000027 3.6e-06 55.5 51 51.0
Zm00001eb372780 Zea mays HOM05D000049 ORTHO05D000027 3.6e-06 55.5 48 56.2
CDE07G1325 Ceratophyllum demersum HOM05D000049 ORTHO05D000027 4.7e-06 55.1 76 39.5
Ca_04181_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 4.7e-06 55.1 75 41.3
Lalb_Chr05g0228261 Lupinus albus HOM05D000049 ORTHO05D000027 4.7e-06 55.1 42 57.1
PSO541G5406 Papaver somniferum HOM05D000049 ORTHO05D000027 6.2e-06 54.7 50 52.0
DCAR_020402 Daucus carota HOM05D000049 ORTHO05D000027 8.1e-06 54.3 40 67.5
FAN27G0752 Fragaria x ananassa HOM05D000049 ORTHO05D000027 8.1e-06 54.3 37 64.9
Hma1.2p1_0052F.1_g030590 Hydrangea macrophylla HOM05D000049 ORTHO05D000027 8.1e-06 54.3 50 52.0
Lalb_Chr16g0392341 Lupinus albus HOM05D000049 ORTHO05D000027 8.1e-06 54.3 42 57.1
Pp3c4_20601 Physcomitrium patens HOM05D000049 ORTHO05D000027 8.1e-06 54.3 50 52.0
Rhsim12G0115900 Rhododendron simsii HOM05D000049 ORTHO05D000027 8.1e-06 54.3 43 53.5


User provided reference genes

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