Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.6e-95 351.3 188 100.0
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.3e-76 290.0 188 86.2
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.2e-63 246.9 179 80.4
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.2e-63 246.9 179 80.4
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.7e-60 236.5 174 78.7
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 4.5e-58 228.4 179 70.9
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.2e-55 220.3 179 68.7
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 1.4e-54 216.9 179 68.2
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.0e-54 215.7 179 66.5
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 5.2e-54 214.9 179 69.3
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 3.4e-53 212.2 179 67.0
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 3.4e-53 212.2 179 65.4
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 4.4e-53 211.8 179 68.2
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 7.5e-53 211.1 179 68.2
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.2e-52 209.5 179 68.2
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.2e-51 205.7 179 63.7
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 2.0e-50 203.0 179 65.9
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 2.0e-50 203.0 179 64.2
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 2.7e-50 202.6 181 63.5
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.7e-50 202.6 179 63.7
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.7e-50 202.6 178 62.9
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 3.5e-50 202.2 179 62.6
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.9e-50 201.4 179 63.7
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 7.8e-50 201.1 179 63.7
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 1.0e-49 200.7 179 63.7
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 2.3e-49 199.5 179 64.2
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.9e-49 198.7 179 63.1
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 5.0e-49 198.4 179 61.5
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 5.0e-49 198.4 179 63.1
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 8.6e-49 197.6 179 62.6
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 8.6e-49 197.6 180 63.9
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 8.6e-49 197.6 207 58.9
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.9e-48 196.4 179 64.2
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 4.3e-48 195.3 181 63.0
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 4.3e-48 195.3 179 63.1
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 4.3e-48 195.3 179 63.7
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 7.3e-48 194.5 178 62.4
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 9.5e-48 194.1 181 61.9
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 1.2e-47 193.7 181 64.1
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.6e-47 193.4 180 63.9
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 3.6e-47 192.2 180 60.6
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 3.6e-47 192.2 186 62.9
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 1.1e-46 190.7 179 63.1
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 1.4e-46 190.3 180 61.7
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.4e-46 190.3 178 61.2
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 1.4e-46 190.3 178 61.2
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 1.4e-46 190.3 180 62.2
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 2.3e-46 189.5 179 63.1
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 4.0e-46 188.7 179 62.6
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 6.8e-46 188.0 183 62.8
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 8.9e-46 187.6 178 60.1
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 8.9e-46 187.6 179 59.8
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 8.9e-46 187.6 180 61.7
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 1.2e-45 187.2 186 61.8
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 2.0e-45 186.4 179 61.5
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 2.0e-45 186.4 176 61.9
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 3.4e-45 185.7 179 60.9
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 4.4e-45 185.3 180 61.7
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 5.8e-45 184.9 179 62.0
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 7.5e-45 184.5 180 61.1
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 9.8e-45 184.1 179 59.2
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 9.8e-45 184.1 179 59.2
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 9.8e-45 184.1 188 58.0
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 1.3e-44 183.7 180 59.4
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.7e-44 183.3 176 61.9
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 2.9e-44 182.6 181 61.3
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 2.9e-44 182.6 242 50.4
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 8.3e-44 181.0 179 59.2
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.1e-43 180.6 178 60.1
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.4e-43 180.3 179 60.3
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.4e-43 180.3 181 61.9
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 2.4e-43 179.5 179 58.1
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 2.4e-43 179.5 179 60.9
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 3.2e-43 179.1 178 59.6
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 4.1e-43 178.7 182 61.0
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 7.0e-43 177.9 179 58.1
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 1.2e-42 177.2 179 58.1
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.6e-42 176.8 181 59.7
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.0e-42 176.4 181 59.7
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 2.0e-42 176.4 181 61.3
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.0e-42 176.4 179 57.5
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 2.0e-42 176.4 179 59.2
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 2.7e-42 176.0 179 60.3
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 2.7e-42 176.0 178 57.3
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 2.7e-42 176.0 181 59.7
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.7e-42 176.0 179 57.5
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.7e-42 176.0 179 57.5
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 3.5e-42 175.6 179 59.2
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 3.5e-42 175.6 177 60.5
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 4.6e-42 175.3 179 59.8
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 4.6e-42 175.3 179 58.7
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 4.6e-42 175.3 179 59.8
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 6.0e-42 174.9 178 58.4
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 6.0e-42 174.9 178 58.4
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 7.8e-42 174.5 179 58.7
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 1.0e-41 174.1 180 59.4
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 1.3e-41 173.7 179 55.9
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 2.3e-41 172.9 178 58.4
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 2.3e-41 172.9 179 58.7
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 3.0e-41 172.6 179 57.5
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 3.9e-41 172.2 180 56.7
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 6.6e-41 171.4 181 60.2
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 8.6e-41 171.0 179 57.5
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.1e-40 170.6 179 55.3
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 1.1e-40 170.6 220 53.2
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 1.5e-40 170.2 182 57.7
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.5e-40 170.2 179 58.1
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 1.9e-40 169.9 180 55.6
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 4.3e-40 168.7 178 56.2
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 4.3e-40 168.7 179 55.9
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 5.6e-40 168.3 192 54.2
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 7.3e-40 167.9 178 56.2
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 1.2e-39 167.2 174 59.2
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 4.7e-39 165.2 178 55.1
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 6.2e-39 164.9 176 56.2
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 3.1e-38 162.5 178 55.1
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 3.1e-38 162.5 265 42.6
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 4.0e-38 162.2 180 57.8
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.2e-38 161.8 181 54.1
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 6.8e-38 161.4 180 55.6
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.5e-37 160.2 179 53.6
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 2.6e-37 159.5 179 54.7
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 4.4e-37 158.7 179 53.6
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 1.3e-36 157.1 182 56.6
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.2e-36 156.4 135 63.7
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 6.4e-36 154.8 205 51.7
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.1e-35 154.1 179 53.6
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.1e-35 154.1 179 53.6
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.4e-35 153.7 155 58.7
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.4e-35 152.9 179 51.4
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 2.4e-35 152.9 179 52.0
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 7.1e-35 151.4 183 54.1
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.2e-34 150.6 179 51.4
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 3.5e-34 149.1 236 43.6
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 4.6e-34 148.7 184 50.0
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 3.0e-33 146.0 163 54.6
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 3.9e-33 145.6 148 57.4
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 6.6e-33 144.8 126 64.3
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.9e-32 143.3 182 50.0
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.3e-32 142.5 182 49.5
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 9.5e-32 141.0 137 59.9
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.6e-31 140.2 180 50.0
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.6e-31 140.2 183 48.6
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 3.6e-31 139.0 182 49.5
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 8.1e-31 137.9 179 51.4
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 1.1e-30 137.5 111 66.7
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-30 137.1 182 48.4
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-30 137.1 182 48.4
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-30 137.1 182 48.4
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 4.0e-30 135.6 127 56.7
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 6.8e-30 134.8 163 53.4
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 2.6e-29 132.9 180 50.0
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 4.1e-27 125.6 182 45.6
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 7.8e-26 121.3 144 53.5
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 6.6e-25 118.2 136 54.4
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.6e-25 117.9 137 54.0
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 1.1e-24 117.5 110 61.8
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 5.6e-24 115.2 135 51.9
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 9.6e-24 114.4 126 54.0
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.0e-22 107.8 186 39.2
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 2.6e-21 106.3 124 56.5
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 4.4e-21 105.5 134 50.7
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 9.9e-21 104.4 69 78.3
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.9e-21 104.4 192 39.1
CSS0001594 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.7e-20 103.6 65 89.2
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 6.4e-20 101.7 79 68.4
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 2.4e-19 99.8 94 59.6
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 9.3e-19 97.8 152 44.7
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 1.6e-18 97.1 203 34.5
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 2.1e-18 96.7 68 73.5
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 6.6e-17 91.7 179 39.1
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 4.3e-16 89.0 74 63.5
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.8e-15 86.3 157 42.0
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.4e-14 84.0 63 69.8
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 2.6e-13 79.7 191 33.0
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 1.3e-12 77.4 69 62.3
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 2.9e-12 76.3 180 32.8
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 7.1e-11 71.6 98 49.0
Haze_22054 Corylus avellana HOM05D003593 ORTHO05D004064 2.7e-10 69.7 46 76.1
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 3.3e-08 62.8 114 42.1
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 4.3e-08 62.4 153 32.0
Mapoly0058s0071 Marchantia polymorpha HOM05D003593 ORTHO05D004064 4.8e-07 58.9 93 34.4


User provided reference genes

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