Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.9e-59 231.9 133 100.0
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.1e-18 97.1 134 54.5
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.1e-18 97.1 134 54.5
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.0e-16 90.5 133 50.4
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 5.2e-16 88.2 138 43.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 7.5e-15 84.3 134 48.5
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.2e-14 82.8 133 46.6
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 4.9e-14 81.6 133 45.9
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.3e-14 81.3 140 41.4
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.4e-13 80.1 135 46.7
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 2.4e-13 79.3 133 42.9
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.1e-13 78.6 134 44.8
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.1e-13 78.6 134 44.8
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.7e-12 75.9 138 41.3
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 7.8e-12 74.3 135 48.9
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.0e-11 73.9 133 43.6
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 2.9e-11 72.4 111 51.4
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 6.6e-11 71.2 135 40.7
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 6.6e-11 71.2 135 45.2
Rhsim04G0038500 Rhododendron simsii HOM05D004793 ORTHO05D004423 6.6e-11 71.2 138 46.4
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 6.6e-11 71.2 135 40.7
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.1e-10 70.5 136 43.4
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 2.5e-10 69.3 135 40.0
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 9.5e-10 67.4 133 45.1
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.6e-09 66.6 133 39.8
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 2.8e-09 65.9 141 43.3
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.8e-09 65.9 134 38.8
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 4.7e-09 65.1 133 36.8
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 6.1e-09 64.7 134 40.3
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.0e-08 63.9 144 36.8
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 2.3e-08 62.8 141 36.9
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 2.3e-08 62.8 133 39.1
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 3.1e-08 62.4 141 40.4
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 5.2e-08 61.6 138 37.7
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.2e-07 60.5 145 35.9
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.2e-07 60.5 133 39.1
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.4e-07 58.9 134 38.8
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.3e-06 57.0 135 40.0
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 1.3e-06 57.0 141 31.9
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.7e-06 56.6 136 39.7
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.2e-06 56.2 136 38.2
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 2.9e-06 55.8 140 35.7
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 3.7e-06 55.5 140 32.1
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 4.9e-06 55.1 134 40.3
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 4.9e-06 55.1 135 37.0
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 4.9e-06 55.1 137 35.8
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 4.9e-06 55.1 135 37.0
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 6.4e-06 54.7 134 37.3
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 6.4e-06 54.7 134 35.8
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 6.4e-06 54.7 139 35.3
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.4e-06 54.7 133 34.6
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 8.3e-06 54.3 133 35.3
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 8.3e-06 54.3 133 35.3
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 8.3e-06 54.3 139 35.3
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 8.3e-06 54.3 139 37.4


User provided reference genes

Program Settings