Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.6e-239 832.4 443 100.0
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.2e-170 603.6 422 78.9
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.6e-170 603.2 436 78.0
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 6.7e-169 597.8 422 78.4
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 2.6e-168 595.9 421 77.9
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 4.4e-168 595.1 422 76.1
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 1.3e-167 593.6 422 77.0
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.1e-166 590.5 423 77.5
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.8e-166 589.7 421 76.5
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 4.1e-166 588.6 421 77.0
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 5.3e-166 588.2 418 77.3
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 9.1e-166 587.4 422 76.1
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.2e-165 587.0 422 75.1
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 2.6e-165 585.9 420 76.4
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 3.5e-165 585.5 422 76.5
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 3.5e-165 585.5 422 76.5
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 7.7e-165 584.3 421 76.2
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 1.7e-164 583.2 421 76.2
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 2.2e-164 582.8 428 76.2
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.9e-164 582.4 422 76.3
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 5.0e-164 581.6 443 71.8
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.4e-163 580.1 443 71.6
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.9e-163 579.7 443 71.8
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.5e-163 579.3 421 75.5
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 2.5e-163 579.3 416 76.2
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 5.5e-163 578.2 419 75.4
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 9.4e-163 577.4 422 74.6
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.6e-162 576.6 421 75.1
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 1.6e-162 576.6 421 75.3
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.6e-162 576.6 405 80.2
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 2.1e-162 576.2 413 77.2
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.7e-162 575.9 418 75.1
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 3.6e-162 575.5 421 75.3
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.7e-162 575.1 421 76.2
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 8.0e-162 574.3 421 75.1
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 8.0e-162 574.3 420 75.2
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 3.9e-161 572.0 418 74.9
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 5.2e-161 571.6 421 75.5
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.2e-161 571.6 421 75.1
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 6.7e-161 571.2 421 74.3
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 2.0e-160 569.7 421 74.1
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 3.3e-160 568.9 422 75.1
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 3.3e-160 568.9 422 75.1
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 3.3e-160 568.9 421 75.5
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 5.7e-160 568.2 422 74.9
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 5.7e-160 568.2 417 75.5
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 5.7e-160 568.2 418 73.9
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 7.4e-160 567.8 422 73.9
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 7.4e-160 567.8 421 74.6
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 9.7e-160 567.4 422 74.6
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 9.7e-160 567.4 421 74.3
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 9.7e-160 567.4 414 73.9
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 9.7e-160 567.4 421 74.6
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 9.7e-160 567.4 421 74.1
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 2.2e-159 566.2 418 74.4
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.2e-159 566.2 420 74.8
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.2e-159 566.2 420 74.8
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 3.7e-159 565.5 421 74.6
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 4.8e-159 565.1 421 74.1
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 4.8e-159 565.1 420 74.5
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.8e-159 565.1 420 74.5
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 4.8e-159 565.1 421 73.6
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.1e-158 563.9 421 73.4
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 2.4e-158 562.8 475 67.8
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 2.4e-158 562.8 421 74.1
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 7.0e-158 561.2 421 73.6
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 7.0e-158 561.2 421 73.6
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 9.1e-158 560.8 421 74.6
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 9.1e-158 560.8 421 73.2
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 9.1e-158 560.8 477 67.7
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 9.1e-158 560.8 421 73.9
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.2e-157 560.5 416 74.8
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 1.2e-157 560.5 421 73.2
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.2e-157 560.5 421 73.6
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 1.2e-157 560.5 443 71.1
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 1.6e-157 560.1 421 74.1
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 2.6e-157 559.3 421 74.8
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 4.5e-157 558.5 400 77.8
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 5.9e-157 558.1 421 74.3
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 5.9e-157 558.1 404 76.7
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 7.7e-157 557.8 416 73.6
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.7e-156 556.6 418 73.0
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.8e-156 555.4 472 66.5
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 5.0e-156 555.1 422 73.5
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.1e-155 553.9 421 72.4
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 3.2e-155 552.4 405 75.3
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 5.5e-155 551.6 421 72.0
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 7.2e-155 551.2 463 67.6
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 9.4e-155 550.8 421 71.7
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.2e-154 550.4 405 74.1
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.6e-154 550.1 421 72.7
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 3.0e-153 545.8 452 68.4
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 5.2e-153 545.0 421 71.7
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 8.8e-153 544.3 414 72.7
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 7.5e-152 541.2 421 72.2
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 3.7e-151 538.9 419 70.9
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 1.4e-150 537.0 448 69.4
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 2.4e-150 536.2 429 68.8
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 3.1e-150 535.8 444 66.7
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 7.0e-150 534.6 407 72.5
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 7.0e-150 534.6 407 72.5
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 4.5e-149 531.9 402 72.9
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 2.9e-148 529.3 421 69.4
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.8e-148 528.9 428 68.5
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 5.0e-148 528.5 421 69.4
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.5e-147 526.2 422 68.2
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.0e-145 520.8 394 73.6
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 3.0e-145 519.2 417 69.8
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 1.5e-144 516.9 417 66.9
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 8.3e-143 511.1 417 69.1
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 9.5e-139 497.7 484 62.2
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 3.0e-137 492.7 421 66.3
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 7.5e-136 488.0 418 66.7
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 5.0e-132 475.3 405 69.6
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 4.1e-126 455.7 417 61.2
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 4.1e-126 455.7 417 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 5.2e-121 438.7 421 56.1
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 3.3e-115 419.5 421 54.6
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.6e-114 417.2 416 55.0
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.1e-101 373.6 367 57.5
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 1.1e-91 341.3 272 68.8
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.2e-88 331.3 269 68.0
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 3.4e-88 329.7 217 82.9
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 3.9e-84 316.2 415 46.5
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.7e-71 274.2 169 88.2
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 2.9e-71 273.5 195 74.9
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 5.5e-70 269.2 411 44.5
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 1.5e-67 261.2 156 91.0
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 5.7e-59 232.6 421 37.8
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.4e-57 228.0 250 55.6
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.3e-55 221.5 386 36.5
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.2e-53 214.9 191 59.2
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 1.4e-52 211.5 156 69.9
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.1e-46 191.8 419 31.5
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 3.6e-45 186.8 210 52.4
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.8e-44 184.5 453 34.9
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.5e-43 181.4 376 34.8
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.2e-30 137.1 112 62.5
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 4.9e-26 123.2 90 72.2
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.1e-25 120.6 89 69.7
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 1.3e-23 115.2 97 70.1
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 1.2e-21 108.6 90 62.2
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.0e-20 105.5 71 71.8
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.2e-17 94.0 70 74.3
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.2e-13 82.0 178 30.3
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 4.9e-10 70.1 408 24.3
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.1e-09 68.9 158 33.5


User provided reference genes

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