Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018997 Camellia sinensis var. sinensis HOM05D006893 ORTHO05D008495 2.8e-63 245.7 152 100.0
Actinidia40309 Actinidia chinensis HOM05D006893 ORTHO05D008495 2.6e-29 132.9 166 65.1
Dinv44337 Davidia involucrata HOM05D006893 ORTHO05D008495 2.6e-29 132.9 156 60.3
vmacro08097 Vaccinium macrocarpon HOM05D006893 ORTHO05D008495 1.3e-28 130.6 185 63.2
Rhsim04G0228400 Rhododendron simsii HOM05D006893 ORTHO05D008495 1.1e-24 117.5 187 57.8
Dinv29707 Davidia involucrata HOM05D006893 ORTHO05D008495 2.5e-24 116.3 183 51.9
TAR365G1113 Trochodendron aralioides HOM05D006893 ORTHO05D008495 1.1e-22 110.9 163 44.8
Aqoxy2G02860 Aquilegia oxysepala HOM05D006893 ORTHO05D008495 3.1e-22 109.4 151 46.4
CiPaw.01G144100 Carya illinoinensis HOM05D006893 ORTHO05D008495 3.1e-22 109.4 148 48.0
Potri.010G005300 Populus trichocarpa HOM05D006893 ORTHO05D008495 6.9e-22 108.2 148 45.3
Thecc.04G291400 Theobroma cacao HOM05D006893 ORTHO05D008495 1.5e-21 107.1 161 44.1
TWI53G1979 Tripterygium wilfordii HOM05D006893 ORTHO05D008495 2.6e-21 106.3 154 48.1
Duzib212G0998 Durio zibethinus HOM05D006893 ORTHO05D008495 1.7e-20 103.6 158 43.7
Cc03_g01320 Coffea canephora HOM05D006893 ORTHO05D008495 2.9e-20 102.8 159 44.7
Nn3g21581 Nelumbo nucifera HOM05D006893 ORTHO05D008495 2.9e-20 102.8 150 56.0
Hma1.2p1_1352F.1_g277580 Hydrangea macrophylla HOM05D006893 ORTHO05D008495 6.4e-20 101.7 229 36.2
MBI18_g04566_MAGBIO Magnolia biondii HOM05D006893 ORTHO05D008495 1.1e-19 100.9 146 45.9
GSVIVG01035078001 Vitis vinifera HOM05D006893 ORTHO05D008495 4.2e-19 99.0 159 55.3
TAR362G0125 Trochodendron aralioides HOM05D006893 ORTHO05D008495 7.1e-19 98.2 148 46.6
Duzib052G0831 Durio zibethinus HOM05D006893 ORTHO05D008495 1.2e-18 97.4 167 41.9
Sabra10G0004500 Salix brachista HOM05D006893 ORTHO05D008495 1.6e-18 97.1 148 42.6
QL06p010948 Quercus lobata HOM05D006893 ORTHO05D008495 3.5e-18 95.9 160 46.2
Cpa.g.sc9.112 Carica papaya HOM05D006893 ORTHO05D008495 1.0e-17 94.4 151 42.4
Gorai.005G062300 Gossypium raimondii HOM05D006893 ORTHO05D008495 1.3e-17 94.0 162 43.8
TAR371G1102 Trochodendron aralioides HOM05D006893 ORTHO05D008495 2.3e-17 93.2 178 39.9
TAR636G3297 Trochodendron aralioides HOM05D006893 ORTHO05D008495 2.3e-17 93.2 178 39.9
Lj6C683T11 Lonicera japonica HOM05D006893 ORTHO05D008495 1.1e-16 90.9 223 33.6
TWI09G0148 Tripterygium wilfordii HOM05D006893 ORTHO05D008495 1.5e-16 90.5 211 35.1
Gohir.A02G051500 Gossypium hirsutum HOM05D006893 ORTHO05D008495 2.5e-16 89.7 165 41.8
Gohir.D02G056400 Gossypium hirsutum HOM05D006893 ORTHO05D008495 2.5e-16 89.7 162 42.6
CiPaw.02G078700 Carya illinoinensis HOM05D006893 ORTHO05D008495 1.6e-15 87.0 143 41.3
Manes.15G008800 Manihot esculenta HOM05D006893 ORTHO05D008495 4.8e-15 85.5 188 38.3
Ciclev10005318m.g Citrus clementina HOM05D006893 ORTHO05D008495 6.2e-15 85.1 217 34.1
FAN07G1462 Fragaria x ananassa HOM05D006893 ORTHO05D008495 1.1e-14 84.3 165 46.7
SGA_v2.0_scaffold146G36231 Striga asiatica HOM05D006893 ORTHO05D008495 1.4e-14 84.0 179 37.4
FvH4_4g18950 Fragaria vesca HOM05D006893 ORTHO05D008495 2.4e-14 83.2 161 47.2
FAN12G3246 Fragaria x ananassa HOM05D006893 ORTHO05D008495 2.4e-14 83.2 161 47.2
FAN12G4353 Fragaria x ananassa HOM05D006893 ORTHO05D008495 2.4e-14 83.2 161 47.2
arahy.Tifrunner.gnm1.ann1.8F5MWG Arachis hypogaea HOM05D006893 ORTHO05D008495 4.0e-14 82.4 155 43.2
Nn4g25705 Nelumbo nucifera HOM05D006893 ORTHO05D008495 5.3e-14 82.0 152 41.4
Migut.N00064 Erythranthe guttata HOM05D006893 ORTHO05D008495 9.0e-14 81.3 187 35.8
Nitab4.5_0002755g0070 Nicotiana tabacum HOM05D006893 ORTHO05D008495 9.0e-14 81.3 226 33.6
Manes.03G200250 Manihot esculenta HOM05D006893 ORTHO05D008495 2.0e-13 80.1 160 41.2
PSO407G0319 Papaver somniferum HOM05D006893 ORTHO05D008495 4.5e-13 79.0 152 40.1
Prupe.1G129100 Prunus persica HOM05D006893 ORTHO05D008495 4.5e-13 79.0 163 42.3
Oeu016262.1 Olea europaea HOM05D006893 ORTHO05D008495 7.6e-13 78.2 140 38.6
Phvul.003G108900 Phaseolus vulgaris HOM05D006893 ORTHO05D008495 1.3e-12 77.4 141 39.0
VMungo1215G1370 Vigna mungo HOM05D000322 ORTHO05D000186 1.3e-12 77.4 141 39.7
Glyma.07G244000 Glycine max HOM05D006893 ORTHO05D008495 1.7e-12 77.0 138 41.3
arahy.Tifrunner.gnm1.ann1.RE2MDR Arachis hypogaea HOM05D006893 ORTHO05D008495 2.9e-12 76.3 97 50.5
Duzib151G1176 Durio zibethinus HOM05D006893 ORTHO05D008495 2.9e-12 76.3 149 36.2
RcHm_v2.0_Chr4g0423841 Rosa chinensis HOM05D006893 ORTHO05D008495 2.9e-12 76.3 91 49.5
MSTRG.21783 Avicennia marina HOM05D006893 ORTHO05D008495 4.9e-12 75.5 212 37.3
Cfa015452 Carpinus fangiana HOM05D006893 ORTHO05D008495 4.9e-12 75.5 158 44.9
CAN.G14.14 Capsicum annuum HOM05D006893 ORTHO05D008495 8.4e-12 74.7 106 49.1
Haze_01136 Corylus avellana HOM05D006893 ORTHO05D008495 8.4e-12 74.7 158 44.9
Nitab4.5_0000306g0330 Nicotiana tabacum HOM05D006893 ORTHO05D008495 8.4e-12 74.7 226 33.2
Lalb_Chr07g0182231 Lupinus albus HOM05D006893 ORTHO05D008495 7.1e-11 71.6 100 48.0
PGSC0003DMG400006243 Solanum tuberosum HOM05D006893 ORTHO05D008495 1.2e-10 70.9 85 52.9
Peaxi162Scf00065g01019 Petunia axillaris HOM05D006893 ORTHO05D008495 1.6e-10 70.5 101 47.5
Gohir.A10G167700 Gossypium hirsutum HOM05D006893 ORTHO05D008495 2.7e-10 69.7 153 37.3
Solyc01g065690.3 Solanum lycopersicum HOM05D006893 ORTHO05D008495 6.0e-10 68.6 84 52.4
Eucgr.H03971 Eucalyptus grandis HOM05D006893 ORTHO05D008495 7.9e-10 68.2 153 39.9
Glyma.17G029900 Glycine max HOM05D006893 ORTHO05D008495 1.8e-09 67.0 139 39.6
Oeu033816.1 Olea europaea HOM05D006893 ORTHO05D008495 1.8e-09 67.0 151 37.1
Sopen01g027090 Solanum pennellii HOM05D006893 ORTHO05D008495 3.0e-09 66.2 84 51.2
PSO170G0180 Papaver somniferum HOM05D006893 ORTHO05D008495 3.9e-09 65.9 143 37.8
MD16G1161600 Malus domestica HOM05D006893 ORTHO05D008495 2.5e-08 63.2 207 29.0
Lj4g0003398 Lotus japonicus HOM05D006893 ORTHO05D008495 2.8e-07 59.7 100 43.0
Lj4g0016264 Lotus japonicus HOM05D006893 ORTHO05D008495 2.8e-07 59.7 100 43.0
PSO170G5603 Papaver somniferum HOM05D006893 ORTHO05D008495 1.1e-06 57.8 93 46.2
PSO357G0434 Papaver somniferum HOM05D006893 ORTHO05D008495 1.1e-06 57.8 100 45.0
PGR004G1654 Punica granatum HOM05D006893 ORTHO05D008495 1.1e-06 57.8 193 31.1
AUR62016159 Chenopodium quinoa HOM05D006893 ORTHO05D008495 2.4e-06 56.6 75 40.0
SalBow2G1430 Salvia bowleyana HOM05D006893 ORTHO05D008495 2.4e-06 56.6 47 66.0
EL10Ac3g04934 Beta vulgaris HOM05D006893 ORTHO05D008495 4.0e-06 55.8 218 30.7
Hund03092 Selenicereus undatus HOM05D006893 ORTHO05D008495 9.0e-06 54.7 247 30.4


User provided reference genes

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