Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 5.9e-29 130.2 66 100.0
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 3.8e-28 127.5 66 98.5
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 3.5e-21 104.4 60 81.7
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.0e-20 102.8 61 82.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.3e-20 101.7 65 80.0
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.0e-20 100.5 61 80.3
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.1e-19 99.4 59 79.7
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.5e-19 99.0 58 75.9
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.5e-19 99.0 61 75.4
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.5e-19 99.0 61 75.4
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.5e-19 99.0 61 75.4
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.5e-19 99.0 61 75.4
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-19 98.2 61 75.4
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 2.5e-19 98.2 61 75.4
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.5e-19 98.2 61 78.7
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.3e-19 97.8 61 77.0
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 4.2e-19 97.4 61 73.8
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 4.2e-19 97.4 61 73.8
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 5.5e-19 97.1 61 72.1
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 5.5e-19 97.1 61 75.4
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 7.2e-19 96.7 61 73.8
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.2e-18 95.9 60 73.3
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.6e-18 95.5 61 73.8
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.6e-18 95.5 60 76.7
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.6e-18 95.5 61 73.8
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.1e-18 95.1 61 75.4
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 2.1e-18 95.1 61 72.1
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 2.1e-18 95.1 61 72.1
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 2.1e-18 95.1 62 72.6
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 2.8e-18 94.7 61 70.5
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 3.6e-18 94.4 61 73.8
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 3.6e-18 94.4 61 73.8
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 4.7e-18 94.0 61 77.0
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 6.1e-18 93.6 65 69.2
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.0e-17 92.8 57 77.2
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 70.5
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 2.3e-17 91.7 61 70.5
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 3.0e-17 91.3 62 69.4
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 5.2e-17 90.5 61 67.2
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 6.8e-17 90.1 58 77.6
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.2e-16 89.4 59 69.5
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.5e-16 89.0 60 68.3
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 2.0e-16 88.6 59 69.5
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 3.4e-16 87.8 60 70.0
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 3.4e-16 87.8 60 66.7
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.3e-15 85.9 60 68.3
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.7e-15 85.5 60 66.7
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.7e-15 85.5 60 68.3
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 2.8e-15 84.7 61 67.2
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 2.8e-15 84.7 60 65.0
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 3.7e-15 84.3 60 63.3
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 3.7e-15 84.3 60 63.3
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 3.7e-15 84.3 60 63.3
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 4.9e-15 84.0 60 66.7
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 4.9e-15 84.0 62 61.3
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 4.9e-15 84.0 60 63.3
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 8.3e-15 83.2 55 69.1
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 1.4e-14 82.4 60 65.0
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 1.8e-14 82.0 60 65.0
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 7.0e-14 80.1 68 60.3
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 1.2e-13 79.3 60 63.3
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 3.5e-13 77.8 53 67.9
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 3.5e-13 77.8 61 62.3
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 3.5e-13 77.8 61 59.0
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.5e-13 77.4 53 67.9
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 7.8e-13 76.6 60 61.7
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.3e-12 75.9 53 69.8
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 1.3e-12 75.9 60 61.7
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.3e-12 75.1 63 58.7
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 2.9e-12 74.7 62 61.3
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 6.6e-12 73.6 55 65.5
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.9e-11 72.0 53 64.2
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.3e-11 70.9 53 62.3
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 4.3e-11 70.9 60 56.7
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 4.3e-11 70.9 53 66.0
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 9.5e-11 69.7 53 62.3
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 9.5e-11 69.7 46 71.7
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.1e-10 68.6 53 62.3
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 2.1e-10 68.6 46 76.1
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 2.1e-10 68.6 43 74.4
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 2.8e-10 68.2 59 55.9
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 3.6e-10 67.8 53 62.3
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.6e-10 67.8 57 57.9
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 4.7e-10 67.4 53 64.2
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 4.7e-10 67.4 49 61.2
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.4e-09 65.9 53 58.5
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 2.3e-09 65.1 53 60.4
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 3.1e-09 64.7 57 54.4
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 3.1e-09 64.7 57 50.9
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 6.8e-09 63.5 57 52.6
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 6.8e-09 63.5 57 57.9
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 8.9e-09 63.2 53 56.6
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 8.9e-09 63.2 53 56.6
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.2e-08 62.8 53 56.6
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.2e-08 62.8 53 56.6
CARHR049680 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.2e-08 62.8 43 62.8
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.5e-08 62.4 53 56.6
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.5e-08 62.4 53 58.5
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.6e-08 61.6 53 56.6
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 3.4e-08 61.2 53 54.7
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.4e-08 61.2 53 54.7
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.4e-08 61.2 53 54.7
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 3.4e-08 61.2 53 54.7
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.8e-08 60.5 53 54.7
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 7.5e-08 60.1 43 65.1
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 7.5e-08 60.1 61 47.5
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 9.8e-08 59.7 53 56.6
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 9.8e-08 59.7 57 50.9
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 9.8e-08 59.7 57 50.9
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.3e-07 59.3 56 46.4


User provided reference genes

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