Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.2e-80 303.1 153 100.0
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.2e-79 298.9 151 98.0
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 5.3e-73 277.7 150 88.7
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 5.3e-73 277.7 150 88.7
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 5.0e-71 271.2 153 87.6
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 6.5e-71 270.8 153 86.9
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.1e-70 270.0 153 86.9
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.1e-70 270.0 153 85.0
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.9e-70 269.2 153 86.9
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.2e-70 268.1 150 88.0
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 4.2e-70 268.1 153 86.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 7.2e-70 267.3 153 85.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 9.4e-70 266.9 153 84.3
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.6e-69 266.2 153 85.0
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 2.1e-69 265.8 153 86.9
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.1e-69 265.8 153 85.0
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.7e-69 265.4 150 86.0
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 2.7e-69 265.4 153 84.3
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.1e-69 264.2 148 87.2
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.1e-69 264.2 150 86.7
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.9e-69 263.8 153 85.0
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 83.7
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 83.7
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.4e-68 263.1 150 86.0
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.4e-68 263.1 150 86.0
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 1.8e-68 262.7 150 84.0
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 85.6
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 84.3
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 3.0e-68 261.9 153 83.7
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 3.0e-68 261.9 153 84.3
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 3.9e-68 261.5 152 84.2
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.9e-68 261.5 153 83.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.9e-68 261.5 150 84.7
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 5.1e-68 261.2 153 81.7
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 5.1e-68 261.2 150 84.7
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 5.1e-68 261.2 150 84.0
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 82.4
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 82.4
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 8.8e-68 260.4 150 84.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.5e-67 259.6 150 80.7
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.5e-67 259.6 150 80.7
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 1.5e-67 259.6 151 82.8
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 2.0e-67 259.2 153 81.0
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 81.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 83.0
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 82.4
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 4.4e-67 258.1 150 80.7
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 5.7e-67 257.7 151 83.4
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 5.7e-67 257.7 153 82.4
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 9.7e-67 256.9 150 82.7
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 83.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.3e-66 256.5 150 82.7
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.3e-66 256.5 153 79.7
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.3e-66 256.5 145 83.4
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.7e-66 256.1 153 81.0
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.7e-66 256.1 150 80.7
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 2.2e-66 255.8 150 82.7
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.2e-66 255.8 153 81.0
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.8e-66 255.4 150 83.3
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.7e-66 255.0 150 82.0
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 4.8e-66 254.6 150 82.7
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.8e-66 254.6 150 81.3
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.8e-66 254.6 151 80.1
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 6.3e-66 254.2 145 85.5
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 6.3e-66 254.2 153 83.0
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 6.3e-66 254.2 150 80.7
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 8.2e-66 253.8 149 81.9
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 78.4
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 79.1
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 79.1
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 81.0
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.4e-65 253.1 150 81.3
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.4e-65 253.1 152 82.2
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 2.4e-65 252.3 150 80.0
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 4.1e-65 251.5 150 82.0
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.3e-65 251.1 153 79.7
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 9.1e-65 250.4 150 82.0
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.2e-64 250.0 147 82.3
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.2e-64 250.0 154 79.2
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.0e-64 249.2 155 80.0
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.0e-64 249.2 153 81.0
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.6e-64 248.8 152 80.3
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.6e-64 248.8 152 80.3
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 3.5e-64 248.4 153 81.0
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 4.5e-64 248.1 150 78.7
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 5.9e-64 247.7 150 80.7
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 7.7e-64 247.3 155 78.7
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.0e-63 246.9 151 80.8
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 8.5e-63 243.8 152 79.6
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 1.1e-62 243.4 151 75.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 79.1
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 74.5
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 4.2e-62 241.5 153 76.5
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 5.5e-62 241.1 150 78.7
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 7.2e-62 240.7 149 78.5
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 74.5
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 1.2e-61 240.0 150 74.7
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.6e-61 239.6 150 76.0
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 2.7e-61 238.8 153 73.2
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 3.6e-61 238.4 150 73.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 3.6e-61 238.4 151 72.8
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 3.6e-61 238.4 150 73.3
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 3.6e-61 238.4 153 73.9
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 6.1e-61 237.7 148 80.4
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 1.0e-60 236.9 153 73.9
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.4e-60 236.5 149 75.8
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 72.5
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.8e-60 236.1 148 75.0
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 2.3e-60 235.7 153 74.5
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 3.0e-60 235.3 150 74.0
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 4.0e-60 235.0 150 73.3
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 4.0e-60 235.0 150 72.7
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 2.0e-59 232.6 153 71.2
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.6e-59 232.3 150 73.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 9.7e-59 230.3 153 71.9
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.3e-58 229.9 150 72.0
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.7e-58 229.6 150 77.3
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.1e-57 226.9 153 72.5
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.4e-57 225.7 149 73.2
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 2.7e-56 222.2 168 64.9
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 4.5e-56 221.5 151 70.9
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-55 219.9 151 69.5
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.9e-54 216.1 143 74.1
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 3.6e-53 211.8 153 68.0
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 6.8e-52 207.6 149 64.4
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.0e-51 206.1 120 84.2
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.3e-50 203.4 122 82.0
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.3e-50 203.4 119 81.5
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.3e-50 201.1 153 66.7
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.4e-49 199.1 145 59.3
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.7e-47 193.0 128 71.9
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 9.4e-46 187.2 111 77.5
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 3.0e-44 182.2 111 74.8
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.7e-42 175.3 149 53.7
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.6e-40 169.9 178 55.1
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.8e-37 159.1 95 83.2
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 6.8e-36 154.5 149 49.0
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.5e-32 142.1 75 89.3
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.0e-31 140.6 78 87.2
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-31 140.2 121 61.2
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.6e-31 137.5 100 70.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.6e-29 133.3 144 47.2
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 6.2e-29 131.3 75 81.3
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 2.2e-26 122.9 75 77.3
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 2.2e-26 122.9 80 76.2
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 3.7e-26 122.1 89 71.9
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 6.4e-26 121.3 78 79.5
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.3e-26 120.9 67 85.1
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-25 120.6 64 87.5
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 4.1e-25 118.6 76 75.0
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 6.2e-21 104.8 149 38.3
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.1e-12 77.4 53 77.4
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.2e-08 63.9 49 65.3


User provided reference genes

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