Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018964 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 6.7e-70 267.3 143 100.0
CSS0011875 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 3.8e-33 145.2 161 57.1
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 6.2e-23 111.3 99 61.6
Solyc01g102460.4 Solanum lycopersicum HOM05D008155 ORTHO05D010411 4.0e-22 108.6 154 47.4
Sopen01g044900 Solanum pennellii HOM05D008155 ORTHO05D010411 4.0e-22 108.6 154 47.4
TAR362G0658 Trochodendron aralioides HOM05D008155 ORTHO05D010411 6.8e-22 107.8 97 56.7
PGSC0003DMG400018233 Solanum tuberosum HOM05D008155 ORTHO05D010411 1.3e-20 103.6 98 56.1
RcHm_v2.0_Chr3g0459031 Rosa chinensis HOM05D008155 ORTHO05D010411 2.9e-20 102.4 154 50.6
FAN14G4286 Fragaria x ananassa HOM05D008155 ORTHO05D010411 5.4e-19 98.2 105 54.3
FAN02G1576 Fragaria x ananassa HOM05D008155 ORTHO05D010411 9.2e-19 97.4 105 54.3
TAR365G0599 Trochodendron aralioides HOM05D008155 ORTHO05D010411 1.3e-17 93.6 93 50.5
Prupe.6G302400 Prunus persica HOM05D008155 ORTHO05D010411 1.7e-17 93.2 118 44.1
MD12G1197100 Malus domestica HOM05D008155 ORTHO05D010411 5.0e-17 91.7 133 40.6
Ciclev10029557m.g Citrus clementina HOM05D008155 ORTHO05D010411 6.6e-17 91.3 109 45.9
MD04G1183800 Malus domestica HOM05D008155 ORTHO05D010411 5.6e-16 88.2 124 41.1
Oeu034763.2 Olea europaea HOM05D008155 ORTHO05D010411 9.5e-16 87.4 93 52.7
Hma1.2p1_0157F.1_g069510 Hydrangea macrophylla HOM05D008155 ORTHO05D010411 1.2e-15 87.0 151 41.7
MSTRG.5176 Avicennia marina HOM05D008155 ORTHO05D010411 2.1e-15 86.3 149 41.6
DCAR_022333 Daucus carota HOM05D008155 ORTHO05D010411 2.8e-15 85.9 94 47.9
Manes.09G182600 Manihot esculenta HOM05D008155 ORTHO05D010411 1.4e-14 83.6 108 45.4
QL03p011396 Quercus lobata HOM05D008155 ORTHO05D010411 1.4e-14 83.6 122 42.6
SalBow4G1718 Salvia bowleyana HOM05D008155 ORTHO05D010411 3.1e-14 82.4 148 41.2
SalBow4G2153 Salvia bowleyana HOM05D008155 ORTHO05D010411 3.1e-14 82.4 148 41.2
Cfa004403 Carpinus fangiana HOM05D008155 ORTHO05D010411 5.2e-14 81.6 110 43.6
SalBow8G5556 Salvia bowleyana HOM05D008155 ORTHO05D010411 6.8e-14 81.3 58 63.8
Manes.08G106200 Manihot esculenta HOM05D008155 ORTHO05D010411 8.9e-14 80.9 110 43.6
Haze_15003 Corylus avellana HOM05D008155 ORTHO05D010411 2.0e-13 79.7 110 43.6
Atru.chr12.1507 Acer truncatum HOM05D008155 ORTHO05D010411 2.6e-13 79.3 109 45.0
Aqoxy7G02124 Aquilegia oxysepala HOM05D008155 ORTHO05D010411 4.4e-13 78.6 92 45.7
Migut.N00987 Erythranthe guttata HOM05D008155 ORTHO05D010411 7.5e-13 77.8 92 45.7
CANSAT54G1408 Cannabis sativa HOM05D008155 ORTHO05D010411 9.9e-13 77.4 60 55.0
Atru.chr12.1502 Acer truncatum HOM05D008155 ORTHO05D010411 1.3e-12 77.0 109 43.1
Potri.013G000200 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.7e-12 76.6 96 44.8
Rhsim11G0107200 Rhododendron simsii HOM05D008155 ORTHO05D010411 8.3e-12 74.3 104 45.2
Lsat_1_v5_gn_5_146861 Lactuca sativa HOM05D008155 ORTHO05D010411 1.1e-11 73.9 122 41.0
VMungo1383G2435 Vigna mungo HOM05D008155 ORTHO05D010411 1.1e-11 73.9 120 42.5
Nitab4.5_0006193g0010 Nicotiana tabacum HOM05D008155 ORTHO05D010411 2.4e-11 72.8 56 62.5
Thecc.05G331400 Theobroma cacao HOM05D008155 ORTHO05D010411 7.1e-11 71.2 93 41.9
Phvul.001G221000 Phaseolus vulgaris HOM05D008155 ORTHO05D010411 2.1e-10 69.7 144 35.4
Gorai.013G241100 Gossypium raimondii HOM05D008155 ORTHO05D010411 2.7e-10 69.3 57 59.6
Potri.005G001100 Populus trichocarpa HOM05D008155 ORTHO05D010411 2.7e-10 69.3 87 40.2
unitig_699.g19831 Utricularia gibba HOM05D008155 ORTHO05D010411 3.5e-10 68.9 106 44.3
Glyma.19G224100 Glycine max HOM05D008155 ORTHO05D010411 6.0e-10 68.2 153 37.9
Medtr7g111230 Medicago truncatula HOM05D008155 ORTHO05D010411 6.0e-10 68.2 62 46.8
Gohir.A13G206400 Gossypium hirsutum HOM05D008155 ORTHO05D010411 7.8e-10 67.8 57 57.9
COL.COLO4_05473 Corchorus olitorius HOM05D008155 ORTHO05D010411 1.0e-09 67.4 92 45.7
Glyma.03G227200 Glycine max HOM05D008155 ORTHO05D010411 1.3e-09 67.0 139 38.1
ClCG02G014570 Citrullus lanatus HOM05D008155 ORTHO05D010411 2.3e-09 66.2 117 41.0
Lsat_1_v5_gn_1_75801 Lactuca sativa HOM05D008155 ORTHO05D010411 3.9e-09 65.5 98 42.9
Sed0023159 Sechium edule HOM05D008155 ORTHO05D010411 5.1e-09 65.1 144 35.4
CsaV3_2G007430 Cucumis sativus L. HOM05D008155 ORTHO05D010411 6.6e-09 64.7 122 37.7
MELO3C004141.2 Cucumis melo HOM05D008155 ORTHO05D010411 1.1e-08 63.9 129 38.0
arahy.Tifrunner.gnm1.ann1.QRZ24D Arachis hypogaea HOM05D008155 ORTHO05D010411 2.5e-08 62.8 123 37.4
TPR.G35721 Trifolium pratense HOM05D008155 ORTHO05D010411 4.3e-08 62.0 89 37.1
Thhalv10005106m.g Eutrema salsugineum HOM05D008255 ORTHO05D011943 1.2e-07 60.5 85 36.5
Cpa.g.sc48.233 Carica papaya HOM05D008155 ORTHO05D010411 3.6e-07 58.9 63 44.4
SHI18006 Sapria himalayana HOM05D008155 ORTHO05D010411 4.7e-07 58.5 53 56.6
Sed0026568 Sechium edule HOM05D008155 ORTHO05D010411 4.7e-07 58.5 96 38.5
Aa31LG11G10020 Aethionema arabicum HOM05D008255 ORTHO05D011943 1.1e-06 57.4 91 34.1
AT5G26720 Arabidopsis thaliana HOM05D008255 ORTHO05D011943 1.1e-06 57.4 86 41.9
Sp2g21360 Schrenkiella parvula HOM05D008255 ORTHO05D011943 1.1e-06 57.4 58 48.3
unitig_747.g21289 Utricularia gibba HOM05D008155 ORTHO05D010411 1.1e-06 57.4 102 41.2
CARHR080400 Cardamine hirsuta HOM05D024382 ORTHO05D011943 1.4e-06 57.0 91 40.7
BcaNung03958 Brassica carinata HOM05D008255 ORTHO05D011943 1.8e-06 56.6 85 36.5
CARHR186950 Cardamine hirsuta HOM05D008255 ORTHO05D011943 1.8e-06 56.6 86 40.7
BraA06t26610Z Brassica rapa HOM05D008255 ORTHO05D011943 3.1e-06 55.8 87 36.8


User provided reference genes

Program Settings