Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 4.3e-28 127.1 57 100.0
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 1.5e-17 92.0 59 71.2
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 1.5e-17 92.0 59 71.2
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 5.9e-17 90.1 59 69.5
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 7.6e-17 89.7 56 71.4
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 1.0e-16 89.4 58 69.0
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 1.3e-16 89.0 57 64.9
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 5.0e-16 87.0 56 67.9
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 8.5e-16 86.3 56 69.6
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 1.9e-15 85.1 59 66.1
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 7.2e-15 83.2 57 66.7
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 7.2e-15 83.2 57 64.9
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 7.2e-15 83.2 55 65.5
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 7.9e-14 79.7 51 70.6
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 1.0e-13 79.3 55 61.8
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 1.0e-13 79.3 58 58.6
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 1.4e-13 79.0 55 61.8
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 3.0e-13 77.8 58 62.1
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 5.1e-13 77.0 55 61.8
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 8.8e-13 76.3 61 59.0
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 1.1e-12 75.9 61 59.0
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 1.1e-12 75.9 56 62.5
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 1.9e-12 75.1 64 56.2
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 1.9e-12 75.1 56 58.9
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 3.3e-12 74.3 57 59.6
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 3.3e-12 74.3 57 59.6
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 4.3e-12 73.9 59 57.6
Lj1g0004562 Lotus japonicus HOM05D008152 ORTHO05D010231 1.3e-11 72.4 55 60.0
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 2.2e-11 71.6 62 56.5
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 2.2e-11 71.6 56 55.4
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 3.7e-11 70.9 58 62.1
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 4.8e-11 70.5 46 67.4
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 4.1e-10 67.4 62 51.6
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 4.1e-10 67.4 60 53.3
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 5.3e-10 67.0 58 53.4
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 5.3e-10 67.0 55 60.0
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 5.3e-10 67.0 59 54.2
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 9.1e-10 66.2 58 51.7
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 1.5e-09 65.5 43 65.1
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 2.0e-09 65.1 60 48.3
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 7.7e-09 63.2 57 52.6
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 1.3e-08 62.4 58 48.3
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 1.3e-08 62.4 58 50.0
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 1.3e-08 62.4 58 48.3
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 1.3e-08 62.4 58 50.0
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 1.7e-08 62.0 63 47.6
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 1.7e-08 62.0 58 50.0
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 1.7e-08 62.0 60 51.7
Sed0007854 Sechium edule HOM05D008152 ORTHO05D010231 2.2e-08 61.6 57 50.9
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 5.0e-08 60.5 58 46.6
Sed0008507 Sechium edule HOM05D008152 ORTHO05D010231 1.1e-07 59.3 29 65.5
BraA02t04797Z Brassica rapa HOM05D008152 ORTHO05D010231 5.5e-07 57.0 58 46.6
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 5.5e-07 57.0 62 45.2
Aa31LG1G21240 Aethionema arabicum HOM05D008152 ORTHO05D010231 1.2e-06 55.8 65 44.6
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 1.2e-06 55.8 56 48.2
BolC2t06131H Brassica oleracea HOM05D008152 ORTHO05D010231 1.6e-06 55.5 62 46.8
ClCG05G020750 Citrullus lanatus HOM05D008152 ORTHO05D010231 1.6e-06 55.5 49 51.0
Manes.11G003500 Manihot esculenta HOM05D008152 ORTHO05D010231 2.1e-06 55.1 60 43.3
SEGI_34450 Sequoiadendron giganteum HOM05D037356 ORTHO05D010231 2.1e-06 55.1 26 76.9
BolC3t12740H Brassica oleracea HOM05D008152 ORTHO05D010231 2.7e-06 54.7 54 44.4
BcaB01g05882 Brassica carinata HOM05D008152 ORTHO05D010231 4.7e-06 53.9 55 43.6
Ciclev10033235m.g Citrus clementina HOM05D008152 ORTHO05D010231 6.1e-06 53.5 28 71.4


User provided reference genes

Program Settings