Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018959 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D112597 3.6e-79 298.1 145 100.0
CSS0038739 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 4.8e-15 85.1 58 69.0
Actinidia18833 Actinidia chinensis HOM05D006015 ORTHO05D007816 9.4e-11 70.9 75 46.7
Actinidia07868 Actinidia chinensis HOM05D006015 ORTHO05D007816 6.1e-10 68.2 58 56.9
vmacro12084 Vaccinium macrocarpon HOM05D006015 ORTHO05D007816 1.4e-09 67.0 77 46.8
CSS0001355 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 6.7e-09 64.7 57 56.1
CSS0036117 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 6.7e-09 64.7 57 56.1
Aqoxy1G04250 Aquilegia oxysepala HOM05D006015 ORTHO05D007816 8.8e-09 64.3 58 51.7
Dinv26607 Davidia involucrata HOM05D006015 ORTHO05D007816 1.1e-08 63.9 57 54.4
Rhsim06G0176400 Rhododendron simsii HOM05D006015 ORTHO05D007816 1.1e-08 63.9 58 50.0
TAR629G2010 Trochodendron aralioides HOM05D006015 ORTHO05D007816 1.5e-08 63.5 58 50.0
FvH4_6g40640 Fragaria vesca HOM05D006015 ORTHO05D007816 2.5e-08 62.8 57 50.9
FAN05G5154 Fragaria x ananassa HOM05D006015 ORTHO05D007816 2.5e-08 62.8 57 50.9
FAN14G1195 Fragaria x ananassa HOM05D006015 ORTHO05D007816 2.5e-08 62.8 57 50.9
FAN02G2834 Fragaria x ananassa HOM05D006015 ORTHO05D007816 3.3e-08 62.4 57 50.9
FAN09G3933 Fragaria x ananassa HOM05D006015 ORTHO05D007816 3.3e-08 62.4 57 50.9
Manes.12G065800 Manihot esculenta HOM05D006015 ORTHO05D007816 3.3e-08 62.4 57 50.9
Sc21g0000520 Simmondsia chinensis HOM05D006015 ORTHO05D007816 4.3e-08 62.0 57 49.1
Hma1.2p1_0545F.1_g175930 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 5.7e-08 61.6 57 54.4
Hma1.2p1_0545F.1_g175940 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 5.7e-08 61.6 57 54.4
Prupe.3G198000 Prunus persica HOM05D006015 ORTHO05D007816 7.4e-08 61.2 57 52.6
Rhsim04G0027900 Rhododendron simsii HOM05D006015 ORTHO05D007816 9.7e-08 60.8 58 50.0
MD09G1126500 Malus domestica HOM05D006015 ORTHO05D007816 1.7e-07 60.1 57 52.6
Ca_25000_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 2.2e-07 59.7 58 48.3
Ca_30801_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 2.2e-07 59.7 58 48.3
MD17G1116800 Malus domestica HOM05D006015 ORTHO05D007816 2.2e-07 59.7 57 50.9
PGSC0003DMG400017397 Solanum tuberosum HOM05D006015 ORTHO05D007816 2.8e-07 59.3 52 53.8
Gohir.D07G198100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 3.7e-07 58.9 57 45.6
Gohir.D11G156100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 3.7e-07 58.9 58 43.1
Gorai.001G221700 Gossypium raimondii HOM05D006015 ORTHO05D007816 3.7e-07 58.9 57 45.6
HanXRQChr11g0329021 Helianthus annuus HOM05D006015 ORTHO05D007816 3.7e-07 58.9 57 49.1
Sopen07g024010 Solanum pennellii HOM05D006015 ORTHO05D007816 3.7e-07 58.9 52 53.8
Duzib138G1954 Durio zibethinus HOM05D006015 ORTHO05D007816 4.8e-07 58.5 58 44.8
Nn3g19725 Nelumbo nucifera HOM05D006015 ORTHO05D007816 4.8e-07 58.5 57 42.1
RcHm_v2.0_Chr2g0156011 Rosa chinensis HOM05D006015 ORTHO05D007816 4.8e-07 58.5 57 47.4
Thecc.01G195800 Theobroma cacao HOM05D006015 ORTHO05D007816 4.8e-07 58.5 58 46.6
AUR62015007 Chenopodium quinoa HOM05D006015 ORTHO05D007816 6.3e-07 58.2 48 50.0
Lsat_1_v5_gn_7_96920 Lactuca sativa HOM05D006015 ORTHO05D007816 6.3e-07 58.2 57 49.1
BcaC01g03165 Brassica carinata HOM05D006015 ORTHO05D007816 8.2e-07 57.8 58 46.6
A03p44610 Brassica napus HOM05D006015 ORTHO05D007816 8.2e-07 57.8 58 46.6
C03p55440 Brassica napus HOM05D006015 ORTHO05D007816 8.2e-07 57.8 58 46.6
BolC3t17819H Brassica oleracea HOM05D006015 ORTHO05D007816 8.2e-07 57.8 58 46.6
BraA03t13594Z Brassica rapa HOM05D006015 ORTHO05D007816 8.2e-07 57.8 58 46.6
AUR62029116 Chenopodium quinoa HOM05D006015 ORTHO05D007816 8.2e-07 57.8 57 43.9
PGR083G2314 Punica granatum HOM05D006015 ORTHO05D007816 8.2e-07 57.8 57 47.4
Lj8P135T89 Lonicera japonica HOM05D006015 ORTHO05D007816 1.1e-06 57.4 57 45.6
MBI16_g07770_MAGBIO Magnolia biondii HOM05D006015 ORTHO05D007816 1.1e-06 57.4 54 50.0
Medtr1g046210 Medicago truncatula HOM05D006015 ORTHO05D007816 1.1e-06 57.4 58 44.8
Nitab4.5_0001867g0080 Nicotiana tabacum HOM05D006015 ORTHO05D007816 1.1e-06 57.4 58 48.3
Ciclev10015287m.g Citrus clementina HOM05D006015 ORTHO05D007816 1.4e-06 57.0 58 46.6
Gohir.A11G149000 Gossypium hirsutum HOM05D006015 ORTHO05D007816 1.4e-06 57.0 58 43.1
Lj6g0021297 Lotus japonicus HOM05D006015 ORTHO05D007816 1.4e-06 57.0 58 46.6
CiPaw.04G196900 Carya illinoinensis HOM05D006015 ORTHO05D007816 1.8e-06 56.6 58 46.6
COL.COLO4_33334 Corchorus olitorius HOM05D006015 ORTHO05D007816 1.8e-06 56.6 58 44.8
DCAR_019683 Daucus carota HOM05D006015 ORTHO05D007816 1.8e-06 56.6 73 39.7
ECA236G0403 Erigeron canadensis HOM05D006015 ORTHO05D007816 1.8e-06 56.6 57 43.9
Solyc07g045470.3 Solanum lycopersicum HOM05D006015 ORTHO05D007816 1.8e-06 56.6 51 51.0
Carub.0003s2938 Capsella rubella HOM05D006015 ORTHO05D007816 2.4e-06 56.2 58 46.6
Glyma.10G128800 Glycine max HOM05D006015 ORTHO05D007816 2.4e-06 56.2 58 46.6
Psat6g109000 Pisum sativum HOM05D006015 ORTHO05D007816 2.4e-06 56.2 58 46.6
BcaB08g34500 Brassica carinata HOM05D006015 ORTHO05D007816 3.1e-06 55.8 58 46.6
Cfa014228 Carpinus fangiana HOM05D006015 ORTHO05D007816 3.1e-06 55.8 58 44.8
Gorai.007G166200 Gossypium raimondii HOM05D006015 ORTHO05D007816 3.1e-06 55.8 58 41.4
THA.LOC104808847 Tarenaya hassleriana HOM05D006015 ORTHO05D007816 3.1e-06 55.8 58 46.6
Lj1P796T26 Lonicera japonica HOM05D006015 ORTHO05D007816 4.1e-06 55.5 77 41.6
Sabra14G0127200 Salix brachista HOM05D006015 ORTHO05D007816 4.1e-06 55.5 58 46.6
MSTRG.26113 Avicennia marina HOM05D006015 ORTHO05D007816 5.3e-06 55.1 58 43.1
CAN.G177.8 Capsicum annuum HOM05D006015 ORTHO05D007816 5.3e-06 55.1 51 51.0
Eucgr.H00879 Eucalyptus grandis HOM05D006015 ORTHO05D007816 5.3e-06 55.1 58 43.1
PSO210G7679 Papaver somniferum HOM05D006015 ORTHO05D007816 5.3e-06 55.1 58 43.1
PSO302G0043 Papaver somniferum HOM05D006015 ORTHO05D007816 5.3e-06 55.1 58 43.1
AL3G42830 Arabidopsis lyrata HOM05D006015 ORTHO05D007816 6.9e-06 54.7 58 46.6
Migut.K00073 Erythranthe guttata HOM05D006015 ORTHO05D007816 6.9e-06 54.7 58 44.8
Lalb_Chr03g0036841 Lupinus albus HOM05D006015 ORTHO05D007816 6.9e-06 54.7 58 43.1
Nitab4.5_0001701g0190 Nicotiana tabacum HOM05D006015 ORTHO05D007816 6.9e-06 54.7 58 50.0
EL10Ac8g18725 Beta vulgaris HOM05D006015 ORTHO05D007816 9.1e-06 54.3 53 45.3
Duzib211G0350 Durio zibethinus HOM05D006015 ORTHO05D007816 9.1e-06 54.3 58 41.4
Potri.014G167200 Populus trichocarpa HOM05D006015 ORTHO05D007816 9.1e-06 54.3 58 46.6


User provided reference genes

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