Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018935 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.8e-277 958.0 492 100.0
CSS0036601 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.0e-186 657.1 519 73.4
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 2.8e-107 393.3 528 48.1
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 3.4e-81 306.6 510 42.4
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.8e-80 303.1 531 39.9
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 4.5e-73 279.6 484 41.1
vmacro18397 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 5.2e-61 239.6 522 36.8
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 1.3e-40 171.8 390 35.1
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.3e-40 171.0 495 31.1
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 6.1e-38 162.9 503 31.4
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 3.0e-37 160.6 513 31.8
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.5e-36 158.3 453 29.6
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 9.8e-36 155.6 304 37.8
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 4.9e-35 153.3 512 29.9
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 8.3e-35 152.5 480 31.0
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 1.1e-31 142.1 482 30.5
Lj7A618T68 Lonicera japonica HOM05D007742 ORTHO05D004072 6.8e-29 132.9 384 31.8
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 8.3e-27 125.9 290 35.2
Rhsim04G0137500 Rhododendron simsii HOM05D007742 ORTHO05D010160 5.4e-26 123.2 203 41.9
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 3.9e-24 117.1 293 30.4
Peaxi162Scf00420g00831 Petunia axillaris HOM05D007742 ORTHO05D004072 2.5e-23 114.4 516 29.1
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.3e-23 114.0 501 27.3
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 5.6e-23 113.2 323 28.8
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 7.5e-20 102.8 170 41.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 3.2e-18 97.4 280 30.0
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 5.4e-18 96.7 253 31.6
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.5e-17 94.0 450 26.0
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 3.5e-17 94.0 262 29.8
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 1.3e-16 92.0 243 34.6
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 2.3e-16 91.3 297 27.6
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 8.6e-16 89.4 316 26.6
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 3.6e-14 84.0 147 41.5
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 1.4e-13 82.0 277 28.2
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 5.2e-13 80.1 178 34.3
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 6.8e-13 79.7 282 27.0
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.5e-12 78.6 231 29.9
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.5e-12 78.6 231 29.9
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 5.8e-12 76.6 178 34.3
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 2.2e-11 74.7 267 30.0
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 8.4e-11 72.8 282 28.0
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 2.4e-10 71.2 283 27.9
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 5.4e-10 70.1 375 24.5
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 3.5e-09 67.4 303 24.8
Actinidia19545 Actinidia chinensis HOM05D007742 ORTHO05D004072 6.0e-09 66.6 56 55.4
QL06p043010 Quercus lobata HOM05D000529 ORTHO05D000472 6.0e-09 66.6 144 35.4
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 5.1e-08 63.5 236 25.8
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 9.6e-07 59.3 265 25.7


User provided reference genes

Program Settings