Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.5e-308 1060.4 542 100.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.7e-281 970.7 552 91.8
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-254 882.9 572 83.6
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 6.8e-248 860.5 550 82.0
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.4e-247 858.2 565 82.7
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.4e-245 852.0 552 80.8
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 7.0e-245 850.5 550 80.2
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.2e-245 850.1 553 80.3
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.2e-244 849.7 555 80.5
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.5e-244 848.2 585 77.6
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.9e-234 815.8 551 77.3
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.8e-232 809.3 550 77.3
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.2e-232 807.7 552 78.3
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 6.8e-232 807.4 551 76.8
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.5e-231 806.2 546 76.9
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.2e-228 796.6 555 74.2
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 1.1e-226 790.0 550 75.5
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-224 783.1 556 73.2
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 5.2e-224 781.2 553 73.6
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 9.9e-223 776.9 596 69.1
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 3.8e-222 775.0 556 72.7
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 1.2e-220 770.0 551 73.0
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 6.0e-220 767.7 561 72.4
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.0e-220 767.7 549 73.6
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 5.1e-219 764.6 546 72.2
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 6.6e-219 764.2 550 73.3
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 8.7e-219 763.8 549 72.9
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 8.7e-219 763.8 550 73.1
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 1.9e-218 762.7 549 72.7
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.9e-218 762.7 557 73.1
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 5.6e-218 761.1 549 72.5
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 7.3e-218 760.8 548 72.3
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.1e-217 759.2 550 73.1
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 4.8e-217 758.1 546 72.7
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 4.8e-217 758.1 551 72.4
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.4e-216 756.5 550 72.7
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.4e-216 755.7 546 72.2
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 5.3e-216 754.6 550 71.3
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 5.3e-216 754.6 550 72.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.9e-216 754.2 549 72.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.5e-215 753.1 550 72.7
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.5e-215 753.1 546 73.4
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.0e-215 752.7 548 72.3
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.0e-215 752.7 556 71.6
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.4e-215 751.9 550 72.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 7.6e-215 750.7 556 70.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.2e-214 749.2 547 71.8
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.9e-213 746.1 552 71.0
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.9e-213 746.1 551 72.6
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.2e-213 745.0 548 72.3
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.5e-212 741.9 531 74.6
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.1e-211 738.0 545 71.2
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 8.7e-211 737.3 551 70.8
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.1e-210 736.9 551 71.0
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.5e-210 735.7 546 69.2
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 5.6e-210 734.6 548 71.9
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.3e-209 733.4 553 70.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 4.8e-209 731.5 549 69.2
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 4.8e-209 731.5 547 69.3
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 6.2e-209 731.1 548 69.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 8.1e-209 730.7 576 68.9
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.4e-208 729.9 554 68.6
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 4.0e-208 728.4 565 68.8
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 2.6e-207 725.7 548 68.2
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.4e-207 725.3 565 69.0
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 4.5e-207 724.9 557 70.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.5e-207 724.9 559 69.6
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 9.9e-207 723.8 545 70.1
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.3e-206 723.4 547 68.9
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.2e-206 722.6 555 69.0
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 3.8e-206 721.8 552 68.5
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 4.9e-206 721.5 549 70.5
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 6.4e-206 721.1 531 69.9
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 8.4e-206 720.7 547 68.6
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.4e-205 719.9 549 70.1
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.2e-204 716.8 549 69.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.6e-204 716.5 562 67.6
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 3.5e-204 715.3 548 67.2
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 4.6e-204 714.9 548 67.2
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 6.0e-204 714.5 503 74.6
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.8e-203 713.0 549 69.9
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 6.7e-203 711.1 548 66.6
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.5e-202 709.9 548 67.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.5e-202 709.9 530 71.9
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.1e-200 703.7 551 67.5
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.4e-200 703.4 555 67.7
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.8e-200 703.0 553 68.0
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 3.1e-200 702.2 550 68.2
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.3e-198 696.8 548 67.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.4e-197 693.3 542 68.1
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 3.2e-197 692.2 546 68.3
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.5e-197 691.4 541 67.8
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.1e-197 691.0 546 66.5
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.1e-196 689.5 545 66.8
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 3.5e-196 688.7 551 65.5
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 8.7e-195 684.1 563 65.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 5.7e-194 681.4 551 65.3
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 7.4e-194 681.0 555 66.3
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 9.6e-194 680.6 554 66.8
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.6e-193 679.9 548 67.0
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.1e-193 679.5 548 67.0
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 4.8e-193 678.3 553 65.6
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 8.2e-193 677.6 548 66.8
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.4e-192 676.8 553 64.6
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.0e-192 674.1 544 65.4
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.2e-191 673.7 554 66.1
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 2.6e-191 672.5 554 65.5
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.0e-190 670.6 552 67.2
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.0e-190 670.6 546 66.1
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 2.5e-189 666.0 548 66.4
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.5e-189 666.0 550 63.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 5.5e-189 664.8 552 66.5
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.6e-188 663.3 503 71.2
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.7e-188 662.5 576 62.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.0e-182 644.0 558 62.9
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 6.5e-182 641.3 558 62.5
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 3.0e-179 632.5 551 63.5
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.8e-177 625.2 520 66.2
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 4.8e-177 625.2 489 67.7
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 8.5e-174 614.4 540 63.1
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.8e-168 596.7 456 72.6
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.9e-167 591.7 534 61.0
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.1e-164 583.2 518 60.4
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.8e-163 580.1 549 56.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 6.3e-161 571.6 546 60.1
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 4.1e-160 568.9 551 56.3
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.1e-149 534.3 465 65.4
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.2e-149 532.7 550 54.5
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 6.8e-139 498.4 546 54.0
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 2.7e-135 486.5 367 68.4
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 3.0e-134 483.0 555 49.7
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.9e-133 480.3 333 73.6
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.9e-126 456.1 264 88.6
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-125 454.5 260 91.2
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.0e-118 431.4 447 55.7
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.8e-115 420.6 709 40.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.3e-81 308.1 487 39.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 4.5e-58 229.9 536 34.9
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.4e-51 208.4 188 59.0
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.9e-48 198.0 119 79.0
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.3e-41 175.3 213 48.4
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 6.5e-41 172.9 184 54.9
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.6e-39 168.3 137 63.5
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 4.7e-39 166.8 182 53.8
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.3e-33 147.9 146 60.3
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 6.8e-30 136.3 186 42.5
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.2e-29 135.6 162 48.8
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 9.8e-29 132.5 165 50.9
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.7e-28 131.7 128 59.4
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.4e-27 128.6 141 51.8
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 4.0e-14 84.0 82 50.0
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 5.2e-14 83.6 48 77.1
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 8.9e-14 82.8 90 52.2
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.8e-13 80.1 52 67.3
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.8e-13 80.1 52 67.3
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.2e-11 74.3 51 68.6
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 3.2e-11 74.3 146 38.4
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.1e-08 65.9 37 83.8
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.9e-08 65.1 58 62.1


User provided reference genes

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