Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 0.0e+00 1141.7 573 100.0
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.3e-292 1009.2 508 99.6
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 2.0e-258 895.6 571 79.3
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 1.9e-256 889.0 575 78.8
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 1.1e-253 879.8 574 77.5
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.1e-251 873.2 571 76.7
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 5.3e-251 870.9 578 76.3
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 2.6e-250 868.6 572 77.3
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 1.4e-248 862.8 505 84.2
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 4.2e-248 861.3 572 76.4
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 5.5e-248 860.9 570 77.7
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.7e-247 858.6 572 76.2
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 5.2e-246 854.4 574 76.7
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 2.6e-245 852.0 576 74.8
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 4.4e-245 851.3 571 77.4
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 4.4e-245 851.3 507 83.4
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.3e-244 849.7 577 74.4
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.1e-243 846.7 573 74.9
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 9.1e-243 843.6 573 74.5
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 2.0e-242 842.4 505 83.0
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 1.1e-240 836.6 503 81.7
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 4.2e-240 834.7 493 82.6
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.6e-239 832.8 572 74.3
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 2.3e-238 828.9 506 79.6
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 2.3e-238 828.9 587 71.6
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 4.0e-238 828.2 578 73.0
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.5e-237 826.2 580 73.8
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.6e-237 825.5 576 72.6
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 2.6e-237 825.5 575 73.0
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 7.5e-237 823.9 577 74.2
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.4e-235 819.7 571 73.7
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.8e-235 819.3 504 80.0
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 2.2e-233 812.4 493 80.5
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 2.9e-233 812.0 576 72.6
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.9e-233 812.0 503 79.1
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.5e-232 809.7 566 73.9
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 4.2e-232 808.1 577 71.1
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 9.4e-232 807.0 555 74.4
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 9.4e-232 807.0 573 71.4
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 2.7e-231 805.4 493 79.1
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 4.7e-231 804.7 574 71.4
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 3.0e-230 802.0 581 71.8
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 6.8e-230 800.8 580 73.1
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.5e-229 799.7 539 74.4
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 2.8e-228 795.4 572 71.0
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 6.3e-228 794.3 502 78.3
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 8.3e-228 793.9 485 79.4
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 8.3e-228 793.9 576 69.4
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.6e-226 789.6 539 73.7
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 5.9e-226 787.7 491 77.4
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.0e-225 786.9 542 71.6
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 1.7e-225 786.2 569 70.8
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 2.9e-225 785.4 572 70.8
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 3.8e-225 785.0 574 71.6
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 6.5e-225 784.3 572 70.8
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.9e-224 782.7 572 69.8
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 2.5e-224 782.3 573 70.5
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 3.2e-224 781.9 585 68.7
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.2e-224 781.9 472 80.9
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 9.5e-224 780.4 572 69.1
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 1.8e-222 776.2 556 71.4
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 3.0e-222 775.4 492 78.0
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 3.0e-222 775.4 587 69.8
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 8.8e-222 773.9 530 73.4
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 8.8e-222 773.9 530 73.4
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 8.8e-222 773.9 584 70.0
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 8.8e-222 773.9 588 69.2
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 2.6e-221 772.3 489 76.9
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 2.6e-221 772.3 484 77.1
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 5.7e-221 771.2 464 80.4
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 9.8e-221 770.4 592 67.7
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 9.8e-221 770.4 599 67.4
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.7e-220 769.6 450 84.2
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.7e-220 769.6 557 70.0
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 1.7e-220 769.6 537 72.3
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 3.7e-220 768.5 563 69.3
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.3e-220 767.7 557 69.8
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 8.3e-220 767.3 505 74.9
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.4e-219 765.8 547 70.7
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 4.1e-219 765.0 539 72.4
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 4.1e-219 765.0 556 68.9
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 9.2e-219 763.8 510 73.9
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 1.6e-218 763.1 536 72.9
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.9e-218 761.1 521 75.2
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 7.8e-218 760.8 484 76.4
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.3e-217 759.2 504 75.0
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 8.6e-217 757.3 562 69.0
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.1e-216 756.9 557 69.3
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.1e-216 756.9 504 74.8
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 4.0e-214 748.4 570 67.5
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 3.7e-212 741.9 568 67.6
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 5.4e-211 738.0 502 72.5
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.2e-210 736.9 503 73.6
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.7e-209 733.0 464 79.7
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 3.6e-207 725.3 568 65.8
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.8e-206 721.1 439 80.9
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 9.2e-203 710.7 513 69.8
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 1.1e-200 703.7 506 69.8
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 6.2e-199 698.0 573 66.0
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.2e-197 693.7 505 66.5
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.5e-197 693.3 481 73.2
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.4e-197 692.2 505 67.3
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 7.5e-197 691.0 505 67.1
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 1.9e-195 686.4 572 63.6
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 2.1e-191 672.9 410 79.3
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 2.8e-191 672.5 480 66.5
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.1e-187 660.6 445 74.8
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.5e-184 649.4 498 63.5
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 2.1e-183 646.4 514 61.3
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 6.4e-180 634.8 461 67.5
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 1.8e-174 616.7 488 63.3
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 2.4e-171 606.3 480 66.2
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 9.0e-166 587.8 476 58.2
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.7e-164 583.6 475 59.2
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 2.9e-164 582.8 486 59.5
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.4e-163 579.7 477 58.9
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.3e-156 557.4 450 66.0
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.9e-147 526.9 475 53.9
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 5.1e-145 518.8 405 68.4
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 5.7e-144 515.4 323 80.5
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.6e-138 496.1 328 73.8
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 1.7e-127 460.7 509 47.3
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 4.2e-123 446.0 499 47.5
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 3.1e-73 280.4 212 67.5
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 4.3e-67 260.0 476 32.4
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 4.6e-61 240.0 143 80.4
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 4.0e-41 173.7 114 72.8
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 2.6e-40 171.0 426 28.2
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.1e-27 129.0 72 83.3
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.4e-25 121.3 80 81.2
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 3.8e-23 114.0 63 84.1
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.1e-17 95.9 423 24.8
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 1.0e-15 89.4 420 27.4
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 3.2e-06 57.8 28 89.3


User provided reference genes

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