Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1486.5 744 100.0
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1362.4 747 91.2
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1343.2 746 89.3
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1309.3 750 87.7
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1305.0 750 86.8
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1304.7 747 86.6
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1301.6 800 82.9
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1300.8 748 85.8
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1299.6 746 85.9
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1296.2 746 86.3
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1295.0 743 86.1
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1294.6 749 85.7
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1293.9 750 85.6
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1293.1 744 85.3
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1293.1 745 85.4
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1292.3 743 85.9
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1291.6 748 85.4
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1288.9 750 84.9
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1288.5 743 84.9
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1287.3 746 84.6
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1286.2 744 85.3
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1285.8 751 85.6
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1285.4 745 85.2
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1285.0 743 85.3
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 748 86.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1282.7 745 85.5
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1282.7 745 85.4
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1281.5 746 84.3
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 747 85.5
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 744 85.1
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1280.4 747 84.6
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1279.6 748 84.9
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1279.6 747 84.1
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1277.7 749 84.2
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1276.9 748 85.6
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1276.9 745 85.0
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1276.9 747 85.3
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1276.9 777 82.6
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1276.5 743 84.9
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1275.8 748 84.1
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1274.2 744 84.4
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1273.8 746 83.6
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 747 84.3
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1271.5 743 84.9
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1271.1 747 84.6
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1269.6 747 84.9
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 747 85.0
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 745 84.2
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 750 83.7
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 746 85.0
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 750 83.5
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 745 84.3
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1264.6 744 84.4
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1264.2 746 83.8
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1263.1 747 85.1
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 746 83.5
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1260.0 746 83.0
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 760 82.9
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 746 83.6
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 746 83.4
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 748 83.0
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 747 82.6
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1255.0 747 83.5
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 749 82.9
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 747 83.8
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 746 84.3
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1253.0 757 82.8
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 706 86.8
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 757 82.8
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 749 82.1
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 749 82.8
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 746 82.3
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 746 82.2
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1236.9 749 81.8
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 740 82.2
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 840 74.9
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 749 81.4
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 746 81.5
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1228.4 748 82.9
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1228.0 745 80.7
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 697 85.7
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 748 81.0
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1226.8 748 81.0
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1226.8 748 80.9
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1225.7 748 80.7
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1225.3 748 81.6
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1224.9 748 80.6
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 748 80.3
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 751 81.4
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 748 80.6
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 748 80.6
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 747 80.1
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1217.2 747 80.5
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 745 80.0
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 746 80.3
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 746 79.1
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 752 79.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 741 81.1
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1200.3 727 81.3
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 658 88.6
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 743 80.3
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 779 76.0
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1188.7 745 78.9
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1188.7 739 79.6
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1184.5 746 79.6
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1178.7 747 80.7
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1175.2 758 77.8
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1173.3 663 87.5
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1168.7 749 78.5
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1163.3 773 76.2
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1158.7 658 85.9
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1157.9 658 85.7
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1144.8 744 77.2
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1142.1 658 86.8
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1139.4 1055 59.8
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1124.4 748 78.1
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1114.4 758 74.1
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 0.0e+00 1087.0 622 87.1
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.0e-286 989.9 677 69.4
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.2e-283 977.6 675 71.0
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.2e-283 977.6 675 71.0
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.9e-283 976.9 688 69.9
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.0e-282 975.7 675 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 2.6e-282 975.3 678 69.5
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.1e-280 969.9 686 68.8
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-259 900.2 593 76.1
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 5.5e-256 887.9 593 75.5
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 6.9e-251 870.9 679 61.9
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.6e-231 806.6 681 58.0
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 3.2e-224 782.3 681 57.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 1.8e-214 750.0 676 56.8
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.5e-213 746.9 673 62.7
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.1e-199 699.9 676 52.4
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.9e-176 623.6 702 47.6
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 3.8e-164 582.8 361 77.6
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 5.4e-163 578.9 319 90.6
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.4e-158 564.3 305 88.5
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 2.3e-145 520.4 300 87.3
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 9.0e-134 481.9 301 80.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 5.1e-129 466.1 309 75.1
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.0e-121 441.8 294 73.1
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 5.1e-113 412.9 236 83.1
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.5e-104 384.8 298 69.5
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.3e-103 381.7 241 77.6
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.1e-102 378.6 298 68.5
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 5.5e-99 366.3 219 83.6
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 3.0e-89 334.0 223 77.6
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 2.5e-75 287.7 399 48.4
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 6.2e-74 283.1 172 78.5
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.7e-68 265.0 367 40.3
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 4.7e-66 256.9 126 96.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.2e-63 248.1 162 75.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 7.1e-62 243.0 260 54.2
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 5.6e-59 233.4 114 95.6
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 8.6e-52 209.5 138 78.3
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.2e-45 189.1 117 78.6
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 8.1e-42 176.4 172 57.0
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.5e-40 172.2 102 75.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 4.5e-40 170.6 122 70.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.1e-34 151.8 93 76.3
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 5.3e-33 147.1 142 52.1
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 3.4e-32 144.4 113 68.1
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 7.1e-30 136.7 83 80.7
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.8e-28 132.1 138 58.7
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 5.1e-28 130.6 105 62.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.6e-26 125.6 137 54.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.1e-26 123.2 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.2e-24 119.4 99 65.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 4.9e-23 114.0 220 30.9
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.9e-15 88.2 50 78.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 3.2e-14 84.7 56 75.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 5.7e-11 73.9 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5


User provided reference genes

Program Settings