Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018817 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 1.7e-31 138.7 69 100.0
QL01p009947 Quercus lobata HOM05D006358 ORTHO05D008185 1.7e-15 85.5 44 95.5
Sed0014420 Sechium edule HOM05D006358 ORTHO05D008185 1.7e-15 85.5 47 87.2
TWI34G0094 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 1.7e-15 85.5 44 95.5
TAR633G2634 Trochodendron aralioides HOM05D006358 ORTHO05D008185 1.7e-15 85.5 44 95.5
vmacro21759 Vaccinium macrocarpon HOM05D006358 ORTHO05D008185 1.7e-15 85.5 44 95.5
EL10Ac4g10334 Beta vulgaris HOM05D006358 ORTHO05D008185 3.9e-15 84.3 44 90.9
Manes.03G089800 Manihot esculenta HOM05D006358 ORTHO05D008185 3.9e-15 84.3 44 93.2
CiPaw.14G129700 Carya illinoinensis HOM05D006358 ORTHO05D008185 5.1e-15 84.0 44 90.9
AUR62019212 Chenopodium quinoa HOM05D006358 ORTHO05D008185 5.1e-15 84.0 44 90.9
MELO3C014648.2 Cucumis melo HOM05D006358 ORTHO05D008185 5.1e-15 84.0 47 85.1
Hma1.2p1_0050F.1_g029070 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 5.1e-15 84.0 44 90.9
Dinv36328 Davidia involucrata HOM05D006358 ORTHO05D008185 6.6e-15 83.6 44 93.2
Actinidia01838 Actinidia chinensis HOM05D006358 ORTHO05D008185 8.7e-15 83.2 41 97.6
Nn2g15694 Nelumbo nucifera HOM05D006358 ORTHO05D008185 8.7e-15 83.2 41 95.1
QL01p009975 Quercus lobata HOM05D006358 ORTHO05D008185 8.7e-15 83.2 44 93.2
TPR.G10386 Trifolium pratense HOM05D006358 ORTHO05D008185 8.7e-15 83.2 44 93.2
VMungo0720G2736 Vigna mungo HOM05D006358 ORTHO05D008185 8.7e-15 83.2 44 93.2
Prupe.6G013900 Prunus persica HOM05D006358 ORTHO05D008185 1.1e-14 82.8 44 90.9
Sabra01G0008700 Salix brachista HOM05D006358 ORTHO05D008185 1.1e-14 82.8 44 90.9
ClCG02G023710 Citrullus lanatus HOM05D006358 ORTHO05D008185 1.5e-14 82.4 47 83.0
CsaV3_4G023700 Cucumis sativus L. HOM05D006358 ORTHO05D008185 1.5e-14 82.4 47 83.0
Potri.001G011700 Populus trichocarpa HOM05D006358 ORTHO05D008185 1.5e-14 82.4 44 90.9
Sc09g0000330 Simmondsia chinensis HOM05D006358 ORTHO05D008185 1.5e-14 82.4 44 88.6
AUR62000042 Chenopodium quinoa HOM05D006358 ORTHO05D008185 1.9e-14 82.0 43 90.7
Haze_23007 Corylus avellana HOM05D006358 ORTHO05D008185 1.9e-14 82.0 44 86.4
MD11G1015800 Malus domestica HOM05D006358 ORTHO05D008185 1.9e-14 82.0 44 88.6
Cfa009639 Carpinus fangiana HOM05D006358 ORTHO05D008185 2.5e-14 81.6 44 84.1
Ca_11387_v3 Cicer arietinum L. HOM05D006358 ORTHO05D008185 2.5e-14 81.6 45 88.9
Gohir.A08G078500 Gossypium hirsutum HOM05D006358 ORTHO05D008185 2.5e-14 81.6 44 90.9
Gohir.D08G088366 Gossypium hirsutum HOM05D006358 ORTHO05D008185 2.5e-14 81.6 44 90.9
HanXRQChr11g0345451 Helianthus annuus HOM05D006358 ORTHO05D008185 2.5e-14 81.6 44 88.6
Hund07562 Selenicereus undatus HOM05D006358 ORTHO05D008185 2.5e-14 81.6 44 88.6
Thecc.09G216800 Theobroma cacao HOM05D006358 ORTHO05D008185 2.5e-14 81.6 44 88.6
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 3.3e-14 81.3 44 90.9
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 3.3e-14 81.3 44 90.9
TWI34G1842 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 3.3e-14 81.3 41 97.6
Gorai.004G092800 Gossypium raimondii HOM05D006358 ORTHO05D008185 5.6e-14 80.5 44 88.6
Lj2A674T44 Lonicera japonica HOM05D006358 ORTHO05D008185 5.6e-14 80.5 44 88.6
Medtr1g116320 Medicago truncatula HOM05D006358 ORTHO05D008185 5.6e-14 80.5 44 88.6
Phvul.007G005400 Phaseolus vulgaris HOM05D006358 ORTHO05D008185 5.6e-14 80.5 41 95.1
Duzib150G0556 Durio zibethinus HOM05D006358 ORTHO05D008185 7.3e-14 80.1 44 86.4
ECA248G2469 Erigeron canadensis HOM05D006358 ORTHO05D008185 7.3e-14 80.1 44 86.4
arahy.Tifrunner.gnm1.ann1.TN3NK4 Arachis hypogaea HOM05D006358 ORTHO05D008185 9.6e-14 79.7 44 88.6
Cc01_g03170 Coffea canephora HOM05D006358 ORTHO05D008185 9.6e-14 79.7 44 86.4
Lalb_Chr02g0144221 Lupinus albus HOM05D006358 ORTHO05D008185 9.6e-14 79.7 44 88.6
CANSAT54G1685 Cannabis sativa HOM05D006358 ORTHO05D008185 1.3e-13 79.3 44 86.4
Cpa.g.sc1127.2 Carica papaya HOM05D006358 ORTHO05D008185 1.6e-13 79.0 44 84.1
PGR119G1893 Punica granatum HOM05D006358 ORTHO05D008185 1.6e-13 79.0 44 86.4
CAN.G140.8 Capsicum annuum HOM05D006358 ORTHO05D008185 2.1e-13 78.6 44 86.4
Nitab4.5_0003436g0040 Nicotiana tabacum HOM05D006358 ORTHO05D008185 2.1e-13 78.6 44 86.4
Nitab4.5_0005041g0010 Nicotiana tabacum HOM05D006358 ORTHO05D008185 2.1e-13 78.6 44 86.4
Oeu058541.2 Olea europaea HOM05D006358 ORTHO05D008185 2.1e-13 78.6 46 84.8
Peaxi162Scf00192g00019 Petunia axillaris HOM05D006358 ORTHO05D008185 2.1e-13 78.6 44 86.4
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 2.8e-13 78.2 44 84.1
FAN17G2784 Fragaria x ananassa HOM05D006358 ORTHO05D008185 2.8e-13 78.2 41 92.7
Hma1.2p1_0535F.1_g173790 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 2.8e-13 78.2 40 90.0
Lsat_1_v5_gn_1_68460 Lactuca sativa HOM05D006358 ORTHO05D008185 2.8e-13 78.2 58 67.2
MBI06_g07792_MAGBIO Magnolia biondii HOM05D006358 ORTHO05D008185 2.8e-13 78.2 44 84.1
THA.LOC104810430 Tarenaya hassleriana HOM05D006358 ORTHO05D008185 2.8e-13 78.2 44 81.8
Aqoxy1G00024 Aquilegia oxysepala HOM05D006358 ORTHO05D008185 3.6e-13 77.8 44 84.1
Lj5g0002595 Lotus japonicus HOM05D006358 ORTHO05D008185 3.6e-13 77.8 44 86.4
SGA_v2.0_scaffold1G00759 Striga asiatica HOM05D006358 ORTHO05D008185 3.6e-13 77.8 47 80.9
GSVIVG01025367001 Vitis vinifera HOM05D006358 ORTHO05D008185 4.8e-13 77.4 44 86.4
COL.COLO4_10429 Corchorus olitorius HOM05D006358 ORTHO05D008185 6.2e-13 77.0 44 86.4
FvH4_3g44350 Fragaria vesca HOM05D006358 ORTHO05D008185 8.1e-13 76.6 41 90.2
FAN11G2908 Fragaria x ananassa HOM05D000259 ORTHO05D008185 8.1e-13 76.6 41 90.2
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 8.1e-13 76.6 41 90.2
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 8.1e-13 76.6 41 90.2
FAN25G3418 Fragaria x ananassa HOM05D000259 ORTHO05D008185 8.1e-13 76.6 41 90.2
RcHm_v2.0_Chr5g0080731 Rosa chinensis HOM05D006358 ORTHO05D008185 8.1e-13 76.6 41 90.2
DCAR_024375 Daucus carota HOM05D006358 ORTHO05D008185 1.1e-12 76.3 44 84.1
Eucgr.B02608 Eucalyptus grandis HOM05D006358 ORTHO05D008185 1.1e-12 76.3 44 84.1
PSO339G4609 Papaver somniferum HOM05D006358 ORTHO05D008185 1.1e-12 76.3 44 84.1
Ciclev10015496m.g Citrus clementina HOM05D006358 ORTHO05D008185 1.4e-12 75.9 44 84.1
Migut.D00538 Erythranthe guttata HOM05D006358 ORTHO05D008185 1.4e-12 75.9 44 84.1
ATR0807G171 Amborella trichopoda HOM05D006358 ORTHO05D008185 1.8e-12 75.5 44 79.5
Solyc01g006330.4 Solanum lycopersicum HOM05D006358 ORTHO05D008185 1.8e-12 75.5 44 84.1
PGSC0003DMG400032149 Solanum tuberosum HOM05D006358 ORTHO05D008185 1.8e-12 75.5 44 84.1
Atru.chr3.2139 Acer truncatum HOM05D006358 ORTHO05D008185 2.4e-12 75.1 44 81.8
Carub.0001s4002 Capsella rubella HOM05D006358 ORTHO05D008185 3.1e-12 74.7 44 79.5
PSO384G4606 Papaver somniferum HOM05D006358 ORTHO05D008185 6.9e-12 73.6 44 81.8
Atru.BG.108.p Acer truncatum HOM05D006358 ORTHO05D008185 9.0e-12 73.2 44 81.8
Sopen01g002330 Solanum pennellii HOM05D006358 ORTHO05D008185 1.2e-11 72.8 44 81.8
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 2.0e-11 72.0 47 72.3
Sp1g37840 Schrenkiella parvula HOM05D006358 ORTHO05D008185 2.6e-11 71.6 45 80.0
AT1G51110 Arabidopsis thaliana HOM05D006358 ORTHO05D008185 3.4e-11 71.2 45 80.0
BcaB07g33557 Brassica carinata HOM05D006358 ORTHO05D008185 3.4e-11 71.2 45 80.0
BcaC08g43281 Brassica carinata HOM05D006358 ORTHO05D008185 3.4e-11 71.2 45 80.0
A06p02670 Brassica napus HOM05D006358 ORTHO05D008185 3.4e-11 71.2 45 80.0
C06p06310 Brassica napus HOM05D006358 ORTHO05D008185 3.4e-11 71.2 45 80.0
BolC6t35740H Brassica oleracea HOM05D006358 ORTHO05D008185 3.4e-11 71.2 45 80.0
BraA06t23476Z Brassica rapa HOM05D006358 ORTHO05D008185 3.4e-11 71.2 45 80.0
CDE04G2070 Ceratophyllum demersum HOM05D006358 ORTHO05D008185 3.4e-11 71.2 41 82.9
Os07g0470700 Oryza sativa ssp. japonica HOM05D006358 ORTHO05D008185 3.4e-11 71.2 41 78.0
SEGI_10329 Sequoiadendron giganteum HOM05D006358 ORTHO05D008185 5.8e-11 70.5 52 73.1
AL1G58910 Arabidopsis lyrata HOM05D006358 ORTHO05D008185 9.9e-11 69.7 45 77.8
CARHR041130 Cardamine hirsuta HOM05D006358 ORTHO05D008185 9.9e-11 69.7 46 76.1
Thhalv10011532m.g Eutrema salsugineum HOM05D006358 ORTHO05D008185 1.7e-10 68.9 46 76.1
BcaB07g33599 Brassica carinata HOM05D006358 ORTHO05D008185 2.2e-10 68.6 45 75.6
Pp3c6_24510 Physcomitrium patens HOM05D006358 ORTHO05D008185 3.8e-10 67.8 45 77.8
Mapoly0065s0038 Marchantia polymorpha HOM05D006358 ORTHO05D008185 1.6e-08 62.4 45 73.3
unitig_0.g179 Utricularia gibba HOM05D006358 ORTHO05D008185 2.1e-08 62.0 41 73.2
SMO145G0194 Selaginella moellendorffii HOM05D006358 ORTHO05D008185 8.7e-07 56.6 42 69.0


User provided reference genes

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