Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 1.9e-23 111.7 59 100.0
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 8.2e-14 79.7 54 75.9
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 3.8e-11 70.9 48 70.8
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 1.4e-10 68.9 58 67.2
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 1.9e-10 68.6 54 66.7
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 3.2e-10 67.8 58 70.7
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 5.5e-10 67.0 58 62.1
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 7.2e-10 66.6 57 61.4
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 7.2e-10 66.6 58 62.1
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 2.1e-09 65.1 55 61.8
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 3.6e-09 64.3 55 67.3
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 6.1e-09 63.5 58 63.8
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 7.9e-09 63.2 53 66.0
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 1.0e-08 62.8 50 64.0
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 1.0e-08 62.8 57 61.4
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.9e-08 60.8 58 60.3
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 5.1e-08 60.5 58 60.3
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 6.7e-08 60.1 58 60.3
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 8.8e-08 59.7 58 62.1
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 8.8e-08 59.7 61 60.7
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 8.8e-08 59.7 54 61.1
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 1.5e-07 58.9 47 70.2
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.5e-07 58.9 57 57.9
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 1.5e-07 58.9 55 60.0
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 2.0e-07 58.5 50 58.0
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 2.6e-07 58.2 56 60.7
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 3.3e-07 57.8 59 57.6
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 3.3e-07 57.8 51 62.7
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 4.4e-07 57.4 51 58.8
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 4.4e-07 57.4 55 58.2
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 5.7e-07 57.0 55 54.5
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 5.7e-07 57.0 55 54.5
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 7.4e-07 56.6 55 61.8
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 9.7e-07 56.2 56 55.4
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 9.7e-07 56.2 50 64.0
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 2.8e-06 54.7 61 52.5
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 2.8e-06 54.7 61 52.5
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 2.8e-06 54.7 61 52.5
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 2.8e-06 54.7 52 61.5
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 3.7e-06 54.3 50 60.0
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 4.8e-06 53.9 50 60.0
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 4.8e-06 53.9 52 61.5
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 6.3e-06 53.5 54 51.9
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 6.3e-06 53.5 56 51.8


User provided reference genes

Program Settings