Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 7.4e-175 617.1 305 100.0
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.3e-152 542.3 320 86.2
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 3.8e-139 498.4 297 83.5
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.5e-127 459.9 288 77.8
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 7.5e-127 457.6 286 79.4
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.1e-125 452.2 285 77.5
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 2.5e-122 442.6 292 73.3
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 4.7e-121 438.3 285 73.7
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.4e-120 436.8 288 71.2
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 2.3e-120 436.0 285 74.4
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 3.0e-120 435.6 285 72.6
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 8.8e-120 434.1 285 73.0
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 4.4e-119 431.8 294 72.4
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 3.7e-118 428.7 296 70.6
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.8e-117 426.4 279 73.5
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 5.4e-117 424.9 286 71.7
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 5.4e-117 424.9 288 71.2
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 7.0e-117 424.5 296 72.6
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.0e-116 422.9 289 70.6
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 3.5e-116 422.2 288 70.5
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 5.0e-115 418.3 288 69.8
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.1e-114 417.2 296 69.9
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 2.5e-114 416.0 315 65.7
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 2.5e-114 416.0 315 65.7
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 7.3e-114 414.5 289 71.3
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-113 413.7 298 68.1
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-113 413.7 298 68.1
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.8e-112 409.8 287 69.3
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 6.8e-112 407.9 286 71.0
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 8.9e-112 407.5 278 70.5
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.0e-111 406.4 310 66.8
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.0e-111 406.4 310 66.8
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 7.5e-111 404.4 287 68.6
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 2.2e-110 402.9 286 66.8
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 4.9e-110 401.7 287 65.9
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.1e-109 400.6 288 67.7
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.8e-109 399.8 292 66.1
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.4e-109 399.4 275 71.6
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.4e-109 399.4 292 66.4
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 9.2e-109 397.5 288 67.4
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 3.0e-107 392.5 286 66.1
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 3.9e-107 392.1 237 81.0
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 2.5e-106 389.4 286 65.7
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 9.5e-106 387.5 295 65.1
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 9.5e-106 387.5 286 65.4
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 2.8e-105 386.0 287 64.1
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 6.2e-105 384.8 288 64.9
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 1.0e-104 384.0 289 65.7
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.1e-104 382.5 279 66.7
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.1e-104 382.5 282 67.7
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.0e-103 379.8 287 64.8
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 3.4e-103 379.0 286 67.1
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 7.5e-103 377.9 290 66.9
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 2.2e-102 376.3 281 65.8
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 2.2e-102 376.3 281 65.8
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 8.3e-102 374.4 276 67.4
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.6e-100 370.2 289 63.0
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.0e-100 369.8 239 76.2
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 8.6e-99 364.4 278 62.6
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.9e-98 363.2 285 62.5
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 3.3e-98 362.5 301 60.5
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 3.3e-98 362.5 292 59.9
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 6.2e-97 358.2 344 55.5
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.3e-96 356.3 286 63.6
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 5.2e-96 355.1 304 62.5
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 5.2e-96 355.1 287 61.3
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.3e-94 350.5 288 62.8
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 4.1e-93 345.5 289 61.6
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 4.1e-93 345.5 286 62.6
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 7.1e-93 344.7 287 61.3
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 7.1e-93 344.7 253 68.0
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.2e-92 344.0 234 70.5
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.6e-92 343.6 263 65.0
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 3.5e-92 342.4 227 70.9
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 3.5e-92 342.4 229 72.5
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 5.1e-91 338.6 291 59.1
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.9e-90 336.7 286 60.1
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.3e-90 335.9 285 59.3
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 9.5e-90 334.3 283 61.1
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 1.6e-89 333.6 286 59.8
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 6.2e-89 331.6 289 60.2
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 6.2e-89 331.6 278 58.6
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 8.1e-89 331.3 281 56.9
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 8.9e-88 327.8 239 66.1
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 3.4e-87 325.9 300 57.3
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.4e-87 325.5 275 58.5
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 2.2e-86 323.2 299 57.2
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 6.4e-86 321.6 297 57.2
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 9.2e-85 317.8 278 59.7
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 3.9e-83 312.4 285 55.4
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 2.5e-82 309.7 226 67.7
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 4.3e-82 308.9 242 62.4
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 5.6e-82 308.5 311 53.7
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 3.6e-81 305.8 160 88.1
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 4.0e-80 302.4 232 61.2
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 1.2e-79 300.8 231 64.1
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.2e-79 300.8 163 84.7
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 2.7e-76 289.7 182 76.9
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 7.8e-76 288.1 223 64.1
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.5e-74 283.9 227 63.0
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 2.4e-72 276.6 304 49.3
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.1e-72 276.2 236 58.5
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 4.6e-68 262.3 300 48.0
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 3.0e-67 259.6 293 51.2
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.1e-65 253.4 289 47.4
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 5.3e-64 248.8 150 74.7
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.0e-59 234.6 304 43.1
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 6.7e-59 231.9 295 48.1
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.1e-57 226.9 260 49.2
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.1e-57 226.9 159 66.7
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 4.0e-56 222.6 183 62.3
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.0e-55 220.3 298 41.6
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 5.8e-55 218.8 288 46.9
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 3.2e-53 213.0 223 52.9
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 5.1e-51 205.7 148 63.5
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 4.1e-48 196.1 143 66.4
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 5.5e-45 185.7 101 88.1
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.2e-44 184.5 254 42.5
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 7.2e-37 158.7 127 60.6
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.2e-36 157.9 100 72.0
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 3.0e-35 153.3 99 69.7
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 1.1e-34 151.4 179 47.5
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.1e-29 134.8 104 67.3
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 7.2e-21 105.5 91 58.2
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.0e-18 97.4 58 79.3
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.7e-17 94.4 58 74.1
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.2e-17 94.0 79 57.0
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.0e-14 85.1 104 50.0
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.2e-13 79.0 66 53.0
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.6e-12 77.8 46 73.9


User provided reference genes

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