Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 4.0e-191 671.4 366 100.0
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 2.4e-47 193.7 244 53.7
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 1.2e-43 181.4 219 60.7
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 8.9e-42 175.3 248 50.0
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 1.7e-40 171.0 236 49.2
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 7.8e-38 162.2 237 51.5
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 1.4e-34 151.4 319 42.0
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 5.2e-34 149.4 305 38.7
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 4.4e-33 146.4 234 43.6
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 9.8e-33 145.2 228 44.3
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 8.3e-32 142.1 235 43.0
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 1.9e-31 141.0 217 45.6
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 4.1e-31 139.8 221 43.0
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 7.1e-31 139.0 223 44.4
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 2.7e-30 137.1 361 37.1
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 1.0e-29 135.2 224 43.3
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 1.7e-29 134.4 244 45.9
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 1.7e-29 134.4 222 43.7
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 3.0e-29 133.7 285 38.6
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.1e-28 131.7 226 48.2
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 1.5e-28 131.3 250 45.2
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 1.5e-28 131.3 233 45.9
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 4.3e-28 129.8 330 36.1
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 4.3e-28 129.8 222 49.5
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 5.6e-28 129.4 223 49.3
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 7.3e-28 129.0 80 83.8
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 2.8e-27 127.1 217 46.5
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 2.8e-27 127.1 215 42.8
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 2.8e-27 127.1 223 42.2
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 3.6e-27 126.7 81 82.7
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 6.2e-27 125.9 302 36.1
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 8.1e-27 125.6 213 42.7
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 1.4e-26 124.8 211 39.8
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 1.4e-26 124.8 220 43.6
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 1.8e-26 124.4 218 49.5
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 2.3e-26 124.0 223 41.7
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 3.1e-26 123.6 234 42.3
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 4.0e-26 123.2 236 43.6
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 5.2e-26 122.9 210 46.7
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 6.8e-26 122.5 81 82.7
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 6.8e-26 122.5 224 42.4
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 6.8e-26 122.5 211 42.2
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 8.9e-26 122.1 82 80.5
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 8.9e-26 122.1 203 45.3
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 1.5e-25 121.3 81 81.5
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 2.6e-25 120.6 177 44.1
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.6e-25 120.6 81 77.8
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 3.4e-25 120.2 81 79.0
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 4.4e-25 119.8 318 35.8
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 5.8e-25 119.4 221 46.2
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 7.6e-25 119.0 251 38.2
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 9.9e-25 118.6 229 49.8
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 9.9e-25 118.6 229 49.8
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 9.9e-25 118.6 229 49.8
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 1.7e-24 117.9 182 46.7
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 1.7e-24 117.9 212 40.6
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.2e-24 117.5 229 41.9
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 2.9e-24 117.1 84 77.4
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 2.9e-24 117.1 228 49.6
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 3.8e-24 116.7 81 77.8
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 3.8e-24 116.7 81 77.8
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 3.8e-24 116.7 229 40.6
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 4.9e-24 116.3 83 75.9
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 4.9e-24 116.3 208 43.8
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 1.1e-23 115.2 211 40.8
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 1.4e-23 114.8 182 46.7
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 1.4e-23 114.8 82 74.4
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 1.9e-23 114.4 225 38.7
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 1.9e-23 114.4 217 49.8
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 1.9e-23 114.4 297 35.4
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.9e-23 114.4 211 51.7
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 2.4e-23 114.0 81 75.3
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 2.4e-23 114.0 81 75.3
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 5.4e-23 112.8 80 77.5
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 9.2e-23 112.1 172 47.1
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 1.2e-22 111.7 212 45.3
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.6e-22 111.3 203 42.4
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 2.1e-22 110.9 74 79.7
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 2.7e-22 110.5 226 49.6
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 3.5e-22 110.2 216 36.1
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 4.6e-22 109.8 200 41.5
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 4.6e-22 109.8 242 37.2
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 7.8e-22 109.0 223 48.4
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 1.0e-21 108.6 74 78.4
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 1.3e-21 108.2 206 40.3
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 1.3e-21 108.2 206 40.3
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.7e-21 107.8 176 45.5
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 2.3e-21 107.5 229 37.6
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 3.0e-21 107.1 262 34.4
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 3.0e-21 107.1 222 37.8
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 3.0e-21 107.1 222 37.8
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 3.0e-21 107.1 222 37.8
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 3.0e-21 107.1 80 75.0
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 8.6e-21 105.5 237 44.3
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 1.9e-20 104.4 238 45.8
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 3.3e-20 103.6 78 75.6
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 1.2e-19 101.7 232 40.9
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 2.8e-19 100.5 242 38.0
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 3.6e-19 100.1 73 71.2
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 4.7e-19 99.8 176 43.8
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 6.2e-19 99.4 193 43.0
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 5.2e-18 96.3 72 70.8
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 1.2e-17 95.1 246 40.2
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 2.0e-17 94.4 83 62.7
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 4.4e-17 93.2 84 64.3
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 5.8e-17 92.8 192 37.0
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 7.6e-17 92.4 67 73.1
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 2.9e-16 90.5 84 59.5
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 6.4e-16 89.4 59 74.6
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 8.4e-16 89.0 79 60.8
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 2.4e-15 87.4 218 37.6
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 7.1e-15 85.9 205 50.2
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 9.3e-15 85.5 75 64.0
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 1.0e-13 82.0 64 68.8
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 3.0e-13 80.5 58 74.1
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 3.9e-13 80.1 49 79.6
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 3.9e-13 80.1 49 79.6
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 1.2e-09 68.6 36 94.4
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 1.2e-09 68.6 48 70.8
Actinidia17089 Actinidia chinensis HOM05D006245 ORTHO05D007260 2.6e-09 67.4 68 57.4
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 1.7e-08 64.7 51 72.5


User provided reference genes

Program Settings