Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.1e-255 885.2 450 100.0
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.2e-210 736.5 455 84.2
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.2e-207 725.7 457 82.3
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.3e-206 721.1 459 82.1
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.8e-198 696.0 455 80.7
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 5.5e-195 684.5 448 79.2
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 9.8e-192 673.7 453 77.9
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 5.4e-190 667.9 573 65.6
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 2.3e-188 662.5 436 80.0
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 6.0e-181 637.9 455 74.1
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 1.7e-180 636.3 447 75.8
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 5.0e-180 634.8 421 79.1
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 8.6e-180 634.0 442 74.2
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 7.3e-179 630.9 447 75.8
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 6.2e-178 627.9 441 75.3
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 5.2e-177 624.8 451 72.1
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 4.4e-176 621.7 462 73.4
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.2e-175 619.4 441 75.5
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.2e-175 619.4 434 75.6
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 3.7e-175 618.6 420 77.4
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 3.7e-175 618.6 444 73.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 3.7e-175 618.6 461 74.0
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 4.9e-175 618.2 445 74.8
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 2.4e-174 615.9 419 75.7
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.4e-174 615.9 441 73.2
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.2e-174 615.5 447 71.6
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 5.4e-174 614.8 439 73.3
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 7.0e-174 614.4 450 72.4
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 9.2e-174 614.0 467 72.6
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 9.2e-174 614.0 467 72.6
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.7e-173 612.5 424 75.7
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-172 609.8 451 72.5
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.3e-172 609.4 444 73.2
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 6.6e-172 607.8 463 72.6
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 8.6e-172 607.4 452 73.5
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 2.5e-171 605.9 434 73.3
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 3.3e-171 605.5 417 76.5
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.3e-171 605.1 457 70.9
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 5.6e-171 604.7 440 74.3
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.6e-171 604.7 440 74.3
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.6e-171 604.7 444 71.8
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 7.3e-171 604.4 443 74.7
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 9.5e-171 604.0 430 74.9
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 9.5e-171 604.0 430 73.3
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.6e-170 603.2 446 71.5
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 3.6e-170 602.1 439 73.3
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.2e-170 601.3 440 74.3
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 6.2e-170 601.3 436 73.4
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 1.1e-169 600.5 454 71.1
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 5.2e-169 598.2 452 71.2
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 4.4e-168 595.1 436 74.1
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 7.5e-168 594.3 436 72.5
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.3e-167 593.6 441 72.3
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.1e-166 590.5 434 72.1
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.9e-166 589.7 417 74.6
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.2e-166 589.0 483 66.5
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 4.1e-166 588.6 438 71.7
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 7.1e-166 587.8 433 73.4
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 9.2e-166 587.4 430 72.8
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 9.2e-166 587.4 430 72.8
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 2.1e-165 586.3 436 73.2
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 2.1e-165 586.3 444 71.6
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.5e-165 585.5 433 72.5
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.6e-165 585.1 440 71.6
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 3.0e-164 582.4 439 72.4
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.5e-163 580.1 515 63.1
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 3.3e-163 578.9 427 72.8
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 3.6e-162 575.5 442 70.1
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 8.9e-161 570.9 469 68.2
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 2.6e-160 569.3 446 68.6
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 5.8e-160 568.2 426 71.1
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 6.0e-157 558.1 436 68.8
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 7.8e-157 557.8 449 67.9
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.7e-156 556.6 417 69.3
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 2.3e-156 556.2 452 67.7
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 8.1e-154 547.7 418 69.9
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 5.3e-153 545.0 410 71.5
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 6.9e-153 544.7 422 69.2
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.2e-152 543.9 445 68.1
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 4.4e-152 542.0 417 68.8
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.7e-151 540.0 417 69.5
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 2.9e-151 539.3 432 68.3
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 4.9e-151 538.5 417 68.6
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.9e-150 536.6 417 70.0
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.9e-150 536.6 417 69.5
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 4.2e-150 535.4 415 69.4
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 4.2e-150 535.4 415 69.4
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 5.4e-150 535.0 417 69.8
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.2e-149 533.9 438 67.1
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.6e-149 533.5 410 69.3
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.1e-149 533.1 412 68.4
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 6.6e-148 528.1 456 64.9
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.6e-146 523.5 464 65.3
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.0e-145 518.8 414 67.9
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 5.3e-145 518.5 466 63.1
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 9.0e-145 517.7 413 67.3
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.7e-143 513.5 399 68.7
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 2.1e-141 506.5 440 64.5
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 3.5e-141 505.8 450 63.3
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 2.2e-135 486.5 363 70.8
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.2e-133 480.7 379 70.7
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-133 480.3 440 62.7
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 4.6e-133 478.8 372 69.6
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 4.6e-133 478.8 486 55.8
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.0e-132 477.6 328 78.4
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 5.1e-132 475.3 440 59.5
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.9e-131 473.4 407 60.0
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 2.1e-130 469.9 452 59.1
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.2e-130 468.4 406 60.3
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 6.9e-129 464.9 418 62.2
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-128 464.2 406 59.9
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.5e-128 463.8 408 62.5
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.6e-128 463.0 407 61.7
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.1e-125 453.4 415 61.4
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 3.9e-124 449.1 416 61.1
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 2.5e-123 446.4 384 65.6
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.2e-122 443.4 382 63.9
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 9.4e-118 427.9 418 56.0
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 9.7e-115 417.9 371 59.3
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 3.7e-114 416.0 423 56.3
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 3.2e-110 402.9 380 60.8
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.2e-110 402.9 380 57.1
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.6e-109 400.6 361 59.6
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.3e-108 396.7 375 56.8
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.5e-104 384.0 370 59.7
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.2e-96 357.8 343 59.2
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.2e-94 349.7 335 58.8
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 9.4e-94 348.2 580 42.2
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.6e-93 347.4 293 66.2
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.0e-92 342.8 405 49.9
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.7e-90 336.3 370 52.2
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.0e-80 303.9 325 53.8
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.5e-78 297.0 305 57.7
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 4.7e-77 292.7 282 59.6
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.3e-76 290.4 291 55.7
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 4.0e-68 263.1 293 53.2
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.6e-64 251.1 253 59.3
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 3.1e-60 236.9 121 95.0
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.9e-58 230.3 187 69.0
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.2e-56 224.9 229 58.1
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 2.3e-52 210.7 238 50.8
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.2e-48 198.4 129 79.1
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 2.3e-47 194.1 323 36.8
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-40 171.4 131 72.5
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 8.7e-39 165.6 171 60.2
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 1.5e-38 164.9 135 71.1
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 5.8e-35 152.9 164 58.5
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 7.6e-35 152.5 114 70.2
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 2.9e-34 150.6 99 83.8
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 4.6e-32 143.3 155 56.1
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 1.7e-26 124.8 69 87.0
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 3.2e-25 120.6 80 78.8
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.2e-25 120.6 98 63.3
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 2.7e-24 117.5 200 44.5
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 6.0e-24 116.3 74 74.3
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.9e-23 113.6 66 87.9
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 8.1e-21 105.9 78 71.8
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.1e-20 105.5 58 87.9
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.2e-19 102.1 70 67.1
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 3.4e-19 100.5 72 69.4
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 5.5e-17 93.2 51 84.3
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 2.1e-16 91.3 73 60.3
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.3e-15 87.8 51 82.4
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.1e-14 85.5 51 80.4
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.4e-14 82.8 55 72.7
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 4.8e-13 80.1 85 57.6
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 8.2e-13 79.3 51 76.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.1e-12 77.0 73 54.8
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.8e-10 70.5 41 78.0
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 3.2e-09 67.4 81 54.3
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.5e-08 63.9 36 88.9
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 6.7e-07 59.7 66 51.5


User provided reference genes

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