Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 4.8e-297 1023.8 561 100.0
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.7e-215 752.3 551 71.7
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.1e-211 740.3 547 72.4
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 6.7e-198 694.5 509 72.5
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.3e-197 691.8 555 64.5
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.5e-184 649.4 548 65.0
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 7.9e-183 644.4 550 64.4
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.3e-182 642.9 550 64.2
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.2e-177 626.3 545 63.3
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 2.2e-177 626.3 550 61.5
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 5.5e-176 621.7 548 61.3
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 3.6e-175 619.0 551 60.4
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.0e-174 617.5 544 60.8
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.8e-172 609.4 558 60.2
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.8e-172 609.4 541 60.6
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.8e-171 606.7 549 61.9
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.8e-171 606.7 545 60.6
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 7.7e-170 601.3 546 60.4
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 2.9e-169 599.4 553 58.6
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.1e-168 597.4 540 59.3
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.9e-168 596.7 551 60.3
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 5.5e-168 595.1 545 60.7
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.0e-166 590.9 553 58.0
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.4e-166 590.5 542 60.1
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 4.4e-165 585.5 690 50.7
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 7.5e-165 584.7 577 56.3
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 8.2e-164 581.3 560 59.1
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 8.2e-164 581.3 542 58.9
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.4e-163 579.7 539 59.9
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.2e-162 577.4 541 58.4
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 4.5e-162 575.5 547 59.8
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 5.9e-162 575.1 553 58.8
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.0e-161 574.3 547 57.4
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 2.2e-161 573.2 539 56.8
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.5e-160 568.5 543 56.9
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.1e-159 566.6 554 57.2
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 6.1e-159 565.1 544 57.4
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 1.0e-158 564.3 539 56.8
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.0e-158 564.3 540 56.9
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.4e-158 563.9 539 57.0
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.4e-158 563.9 544 57.2
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.8e-158 563.5 540 56.9
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 4.4e-157 558.9 540 58.0
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 5.7e-157 558.5 545 57.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 5.7e-157 558.5 547 56.9
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.3e-156 557.4 548 56.2
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 4.8e-156 555.4 454 66.1
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 6.3e-156 555.1 527 58.1
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 8.3e-156 554.7 548 56.2
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.8e-155 553.5 552 55.4
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 7.7e-154 548.1 557 56.6
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 7.7e-154 548.1 546 56.0
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.8e-153 545.8 523 57.2
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 3.2e-152 542.7 557 56.9
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 3.2e-152 542.7 543 56.4
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.2e-151 540.8 539 56.2
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 1.2e-151 540.8 537 56.2
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 2.1e-151 540.0 539 55.5
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.8e-150 537.0 555 54.8
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 8.8e-150 534.6 541 56.0
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 2.6e-149 533.1 540 55.2
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.7e-148 530.4 555 55.0
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.1e-147 527.7 540 55.4
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 7.0e-147 525.0 539 54.0
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 9.2e-147 524.6 540 55.4
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 7.7e-146 521.5 540 55.2
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 3.3e-144 516.2 539 54.4
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 8.0e-143 511.5 540 52.4
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 8.0e-143 511.5 539 54.0
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 2.0e-141 506.9 582 52.4
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 5.7e-141 505.4 473 57.1
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.7e-137 493.8 541 52.5
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 2.8e-135 486.5 542 52.0
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 3.6e-135 486.1 540 52.8
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 2.3e-134 483.4 545 51.2
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.1e-134 483.0 494 53.4
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 3.1e-134 483.0 392 63.3
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 6.8e-134 481.9 545 51.0
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 8.9e-134 481.5 486 55.1
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.3e-132 477.6 545 50.8
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 5.4e-131 472.2 525 52.6
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 2.0e-130 470.3 544 49.6
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.3e-129 467.6 541 51.0
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 2.3e-129 466.8 541 51.0
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.1e-128 464.5 540 50.4
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.5e-128 464.2 544 49.4
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.5e-128 464.2 541 50.6
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.9e-128 463.8 540 50.4
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.1e-127 460.3 544 48.9
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 4.4e-125 452.6 540 49.1
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.1e-123 448.0 345 67.5
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 8.6e-121 438.3 535 49.9
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 8.6e-121 438.3 555 49.2
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.6e-119 433.0 474 51.7
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 5.2e-118 429.1 354 60.2
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 4.9e-116 422.5 551 46.6
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 7.1e-115 418.7 387 60.5
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 2.5e-112 410.2 549 46.6
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.3e-97 361.3 329 58.1
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.3e-92 344.7 393 47.8
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.1e-88 331.6 382 52.4
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.2e-83 313.5 282 61.7
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 2.5e-80 303.9 397 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 3.3e-80 303.5 398 43.7
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 3.7e-79 300.1 583 38.1
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.1e-78 297.0 389 45.8
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.0e-77 294.3 281 56.6
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 7.2e-75 285.8 398 41.7
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 1.2e-74 285.0 563 36.9
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.3e-73 280.8 327 50.2
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 3.1e-70 270.4 223 60.5
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.0e-69 267.7 278 55.8
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.2e-66 258.5 266 52.6
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.0e-64 251.1 166 75.9
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.8e-63 246.5 161 76.4
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.1e-62 245.4 269 54.3
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.8e-57 228.0 420 36.4
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 3.0e-57 227.3 364 40.9
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.1e-54 218.8 159 69.8
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 7.7e-53 212.6 196 57.7
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 6.7e-49 199.5 266 47.7
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 3.1e-46 190.7 124 79.0
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-40 172.2 164 56.1
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.5e-40 171.8 199 51.3
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 2.0e-37 161.4 121 66.9
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.8e-33 148.3 140 59.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 8.3e-31 139.4 292 36.6
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.1e-30 137.1 260 38.8
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.3e-28 132.1 259 39.8
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.0e-21 108.2 141 49.6
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 3.4e-16 90.9 105 49.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.2e-13 82.4 96 49.0
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.2e-13 82.4 96 49.0
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.2e-13 82.4 183 32.8
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 7.8e-13 79.7 98 49.0
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 9.5e-11 72.8 81 53.1


User provided reference genes

Program Settings