Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.3e-126 456.4 231 100.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.7e-57 225.3 150 80.0
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.2e-57 224.9 150 79.3
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.5e-55 220.3 150 78.0
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.0e-55 219.9 150 78.0
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 6.4e-54 214.9 150 75.3
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.6e-52 210.3 120 88.3
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.1e-50 204.1 151 71.5
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.1e-49 199.9 174 63.2
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.8e-49 199.5 150 69.3
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 3.6e-49 199.1 150 69.3
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 6.2e-49 198.4 150 71.3
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 8.1e-49 198.0 158 67.1
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 1.8e-48 196.8 150 70.7
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.4e-48 196.4 150 70.0
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 3.1e-48 196.1 150 70.7
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 3.1e-48 196.1 158 66.5
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 4.0e-48 195.7 122 82.8
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 4.0e-48 195.7 122 82.8
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.0e-48 195.7 150 69.3
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 5.2e-48 195.3 151 70.2
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 6.8e-48 194.9 158 66.5
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.2e-47 194.1 120 84.2
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 1.2e-47 194.1 122 82.0
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.5e-47 193.7 151 70.2
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 2.0e-47 193.4 122 79.5
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 3.4e-47 192.6 118 82.2
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 4.4e-47 192.2 150 66.7
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 5.8e-47 191.8 158 65.8
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 9.9e-47 191.0 150 67.3
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 2.2e-46 189.9 150 66.7
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 2.9e-46 189.5 150 66.7
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.8e-46 189.1 151 66.9
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.8e-46 189.1 159 64.2
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 4.9e-46 188.7 150 66.7
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 4.9e-46 188.7 151 66.9
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 6.4e-46 188.3 123 78.9
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 8.4e-46 188.0 150 65.3
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 8.4e-46 188.0 150 68.0
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 1.1e-45 187.6 150 68.7
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.4e-45 187.2 150 67.3
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.4e-45 187.2 149 68.5
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.9e-45 186.8 151 66.9
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 2.4e-45 186.4 150 65.3
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 2.4e-45 186.4 122 77.0
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 2.4e-45 186.4 122 77.0
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 3.2e-45 186.0 151 66.2
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 4.2e-45 185.7 151 64.9
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.2e-45 185.7 123 80.5
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 4.2e-45 185.7 123 80.5
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 5.4e-45 185.3 122 78.7
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 7.1e-45 184.9 122 76.2
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 7.1e-45 184.9 151 66.2
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 7.1e-45 184.9 149 64.4
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 7.1e-45 184.9 122 76.2
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 7.1e-45 184.9 122 78.7
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 9.2e-45 184.5 122 77.9
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 9.2e-45 184.5 149 67.8
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 9.2e-45 184.5 151 66.9
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.2e-44 184.1 119 80.7
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.6e-44 183.7 149 65.1
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.6e-44 183.7 122 76.2
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 1.6e-44 183.7 122 77.9
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.6e-44 183.7 150 64.0
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.6e-44 183.7 151 66.2
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.7e-44 183.0 122 75.4
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 3.5e-44 182.6 120 79.2
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.0e-43 181.0 123 78.0
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 1.0e-43 181.0 123 78.9
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.3e-43 180.6 123 77.2
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-43 180.6 122 74.6
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-43 180.6 122 74.6
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-43 180.6 150 64.0
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.3e-43 180.6 150 64.0
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.3e-43 180.6 150 64.0
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.7e-43 180.3 122 76.2
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.7e-43 180.3 151 65.6
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.3e-43 179.9 168 58.3
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 3.0e-43 179.5 148 64.2
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 3.0e-43 179.5 150 64.0
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.9e-43 179.1 168 57.7
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 5.1e-43 178.7 122 72.1
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 5.1e-43 178.7 168 57.7
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 5.1e-43 178.7 122 74.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 6.6e-43 178.3 122 74.6
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 8.7e-43 177.9 152 61.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.9e-42 176.8 151 62.9
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.9e-42 176.8 168 57.7
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.9e-42 176.8 120 74.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 3.3e-42 176.0 123 75.6
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 3.3e-42 176.0 151 63.6
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.3e-42 176.0 150 62.0
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 7.3e-42 174.9 151 62.3
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 9.6e-42 174.5 151 62.9
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.2e-41 174.1 151 61.6
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.4e-40 170.6 122 70.5
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.4e-40 169.9 165 58.2
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 2.0e-39 166.8 107 74.8
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 7.6e-39 164.9 149 59.1
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.3e-38 164.1 149 57.0
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 2.2e-38 163.3 122 69.7
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 2.2e-38 163.3 122 68.9
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 8.4e-38 161.4 149 58.4
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.1e-37 161.0 149 58.4
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.1e-37 161.0 122 68.9
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.1e-37 161.0 122 68.9
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.1e-37 161.0 122 68.9
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.4e-37 160.6 158 55.1
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.4e-37 160.6 158 55.1
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.4e-37 160.6 126 67.5
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 2.4e-37 159.8 128 66.4
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 9.3e-37 157.9 150 56.7
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 9.3e-37 157.9 158 54.4
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.6e-36 157.1 105 78.1
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.3e-33 147.5 151 54.3
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 9.0e-32 141.4 104 67.3
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 5.8e-31 138.7 150 54.0
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.1e-29 134.4 97 70.1
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 3.9e-27 125.9 126 55.6
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.7e-25 119.4 123 58.5
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.0e-24 115.9 104 61.5
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.9e-22 109.8 122 53.3
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.9e-22 109.8 122 53.3
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.2e-21 105.9 134 41.8
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 3.8e-14 82.8 124 40.3
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 6.5e-14 82.0 133 42.9
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.0e-11 74.7 85 51.8
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.6e-09 67.4 60 58.3
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 5.3e-08 62.4 58 55.2
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 9.0e-08 61.6 62 54.8
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 9.0e-08 61.6 61 54.1
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.0e-06 58.2 79 40.5


User provided reference genes

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