Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 1.9e-43 178.7 87 100.0
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 1.2e-32 142.9 87 80.5
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 9.8e-32 139.8 83 78.3
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 7.8e-29 130.2 87 72.4
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 1.7e-28 129.0 87 71.3
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 5.6e-27 124.0 83 71.1
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 7.3e-27 123.6 82 72.0
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 6.2e-26 120.6 83 68.7
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 8.1e-26 120.2 83 69.9
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 8.1e-26 120.2 73 78.1
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 1.1e-25 119.8 77 71.4
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 1.8e-25 119.0 83 68.7
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 1.8e-25 119.0 72 75.0
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 4.0e-25 117.9 84 70.2
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 4.0e-25 117.9 84 66.7
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 4.0e-25 117.9 82 72.0
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 2.0e-24 115.5 72 77.8
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 5.8e-24 114.0 71 76.1
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 7.5e-24 113.6 71 74.6
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 7.5e-24 113.6 84 67.9
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 9.9e-24 113.2 83 66.3
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 2.9e-23 111.7 71 74.6
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.9e-23 111.7 87 63.2
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 3.7e-23 111.3 71 74.6
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.1e-22 109.8 64 78.1
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.4e-22 109.4 78 70.5
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 1.4e-22 109.4 80 66.2
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 1.9e-22 109.0 86 61.6
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 3.2e-22 108.2 71 71.8
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 3.2e-22 108.2 71 70.4
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 3.2e-22 108.2 77 66.2
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 7.1e-22 107.1 73 74.0
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 7.1e-22 107.1 83 65.1
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 7.1e-22 107.1 72 69.4
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 3.5e-21 104.8 75 68.0
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 7.8e-21 103.6 73 69.9
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 7.8e-21 103.6 71 74.6
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 1.0e-20 103.2 76 65.8
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 1.3e-20 102.8 71 70.4
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 2.3e-20 102.1 70 70.0
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 2.3e-20 102.1 71 67.6
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 3.0e-20 101.7 72 68.1
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 3.0e-20 101.7 76 67.1
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 3.9e-20 101.3 79 60.8
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 5.1e-20 100.9 79 60.8
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 5.1e-20 100.9 71 69.0
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 5.1e-20 100.9 71 69.0
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 8.6e-20 100.1 70 68.6
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 8.6e-20 100.1 71 64.8
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 1.9e-19 99.0 72 63.9
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 2.5e-19 98.6 85 60.0
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.5e-19 98.6 78 60.3
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 5.6e-19 97.4 72 65.3
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 5.6e-19 97.4 68 69.1
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.6e-18 95.9 73 65.8
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.6e-18 95.9 73 65.8
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 4.7e-18 94.4 64 70.3
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 6.2e-18 94.0 72 63.9
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 8.1e-18 93.6 71 66.2
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 5.2e-17 90.9 74 62.2
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 1.5e-16 89.4 73 61.6
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 1.5e-16 89.4 74 62.2
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 2.0e-16 89.0 74 62.2
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 2.6e-16 88.6 74 60.8
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 3.4e-16 88.2 76 57.9
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 5.8e-16 87.4 74 59.5
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 7.6e-16 87.0 74 59.5
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 9.9e-16 86.7 65 64.6
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 2.2e-15 85.5 74 58.1
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 2.2e-15 85.5 71 56.3
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 2.9e-15 85.1 74 58.1
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 3.8e-15 84.7 53 75.5
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 3.8e-15 84.7 53 75.5
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 6.4e-15 84.0 71 57.7
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 3.2e-14 81.6 76 53.9
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 7.1e-14 80.5 74 55.4
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 3.9e-12 74.7 73 53.4
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 1.9e-11 72.4 61 55.7
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 2.8e-10 68.6 71 49.3
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 1.2e-08 63.2 56 57.1
ECA248G3328 Erigeron canadensis HOM05D000152 ORTHO05D001046 1.3e-07 59.7 53 52.8
SGA_v2.0_scaffold114G31816 Striga asiatica HOM05D007721 ORTHO05D009811 2.9e-07 58.5 49 55.1
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 6.4e-07 57.4 47 55.3
Aa31LG3G11430 Aethionema arabicum HOM05D007721 ORTHO05D009811 1.9e-06 55.8 53 49.1
arahy.Tifrunner.gnm1.ann1.K7RUU1 Arachis hypogaea HOM05D007721 ORTHO05D009811 4.2e-06 54.7 35 65.7


User provided reference genes

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