Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.7e-179 632.5 310 100.0
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.2e-177 626.3 315 98.4
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.0e-176 621.3 310 98.1
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 7.3e-146 520.8 307 81.1
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.9e-141 506.1 306 77.8
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.7e-139 499.6 303 76.2
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 2.3e-139 499.2 338 71.9
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 6.2e-137 491.1 306 76.1
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 1.4e-136 490.0 308 77.3
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 2.0e-135 486.1 306 75.5
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 1.1e-133 480.3 311 74.0
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 3.2e-133 478.8 306 73.9
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 9.3e-133 477.2 306 74.8
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.7e-132 475.7 310 71.3
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.7e-132 475.7 303 73.6
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 2.7e-132 475.7 335 69.3
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 3.5e-132 475.3 310 71.3
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 1.3e-131 473.4 310 72.6
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 8.7e-131 470.7 307 72.3
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.9e-130 469.5 306 74.2
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 4.3e-130 468.4 305 73.1
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 5.6e-130 468.0 306 73.2
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 4.8e-129 464.9 306 73.2
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 6.2e-129 464.5 316 71.2
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.4e-128 463.4 310 70.0
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.8e-128 463.0 297 72.1
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 5.3e-128 461.5 308 71.8
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 6.9e-128 461.1 303 71.3
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 9.9e-127 457.2 330 69.4
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 4.9e-126 454.9 311 69.1
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 6.4e-126 454.5 310 70.0
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 6.4e-126 454.5 316 69.3
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 8.4e-126 454.1 307 69.4
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 3.2e-125 452.2 307 72.0
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 3.2e-125 452.2 292 74.0
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 4.2e-125 451.8 310 67.7
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 7.1e-125 451.1 310 69.0
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 1.6e-124 449.9 310 68.7
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 2.1e-124 449.5 306 71.9
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 3.5e-124 448.7 308 69.2
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 4.6e-124 448.4 306 70.3
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 7.9e-124 447.6 303 70.0
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.3e-123 446.8 304 67.1
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 5.1e-123 444.9 310 67.4
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 6.7e-123 444.5 307 68.7
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 6.7e-123 444.5 304 69.7
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 8.7e-123 444.1 310 69.4
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 1.1e-122 443.7 310 69.4
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 1.1e-122 443.7 310 69.4
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 3.3e-122 442.2 302 70.5
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 4.3e-122 441.8 310 66.1
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 5.6e-122 441.4 310 68.1
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 5.6e-122 441.4 306 68.6
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 5.6e-122 441.4 307 69.1
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.3e-121 440.3 281 75.8
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 1.3e-121 440.3 310 67.4
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.6e-121 439.9 308 68.2
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 2.8e-121 439.1 302 68.9
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 2.8e-121 439.1 305 68.5
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 5.3e-120 434.9 310 66.1
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 6.9e-120 434.5 324 64.2
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 6.9e-120 434.5 313 67.4
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 6.9e-120 434.5 303 67.3
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 2.0e-119 433.0 306 68.3
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 2.6e-119 432.6 310 66.1
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 9.9e-119 430.6 310 64.8
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.7e-118 429.9 310 64.5
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 2.9e-118 429.1 368 58.4
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 3.8e-118 428.7 290 72.1
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 4.9e-118 428.3 310 65.5
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 6.4e-118 427.9 310 65.2
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 6.4e-118 427.9 306 67.3
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 3.2e-117 425.6 310 65.5
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 4.6e-116 421.8 311 65.0
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 5.1e-115 418.3 310 64.5
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 1.9e-114 416.4 277 69.3
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 3.3e-114 415.6 309 67.0
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 7.4e-114 414.5 310 63.9
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 9.6e-114 414.1 310 64.5
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 4.8e-113 411.8 312 64.4
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 4.8e-113 411.8 310 63.9
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 3.1e-112 409.1 310 63.2
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.6e-111 406.0 315 65.7
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 4.5e-111 405.2 337 59.9
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.0e-110 404.1 285 71.9
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 4.9e-110 401.7 283 68.6
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 3.2e-109 399.1 310 61.0
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 2.3e-107 392.9 308 62.0
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 5.7e-106 388.3 308 62.3
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.8e-105 386.0 357 54.6
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 8.5e-102 374.4 350 54.3
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 8.5e-102 374.4 282 65.6
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 8.5e-102 374.4 282 66.0
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.1e-100 369.8 306 61.1
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.1e-96 357.5 303 57.8
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 5.3e-96 355.1 314 55.4
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 2.0e-95 353.2 303 58.4
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 8.8e-91 337.8 302 56.0
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 2.6e-87 326.2 282 61.0
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.7e-86 323.6 283 57.2
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 3.2e-85 319.3 311 54.0
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 2.1e-84 316.6 298 53.0
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.1e-84 316.6 305 52.5
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 8.2e-81 304.7 220 65.9
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 7.7e-79 298.1 309 49.5
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.0e-78 297.7 222 64.9
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 2.2e-78 296.6 193 69.4
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 3.8e-78 295.8 224 62.9
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 4.2e-77 292.4 199 68.8
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.5e-69 266.5 200 64.5
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 5.5e-69 265.4 192 67.2
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.6e-68 263.8 166 77.1
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 1.1e-64 251.1 198 61.1
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 7.7e-63 245.0 232 56.9
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 2.3e-62 243.4 220 57.3
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.9e-62 243.0 171 70.8
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 3.1e-56 223.0 400 35.8
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 8.0e-52 208.4 208 51.9
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.0e-51 208.0 131 81.7
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 2.3e-51 206.8 152 61.8
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 2.0e-50 203.8 310 40.0
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.8e-44 183.3 137 65.7
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.2e-40 169.9 113 73.5
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 8.6e-38 161.8 306 33.0
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 6.2e-36 155.6 299 34.1
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 4.9e-33 146.0 272 34.9
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 6.0e-31 139.0 112 59.8
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 9.5e-29 131.7 81 76.5
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 1.3e-25 121.3 149 45.0
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 4.4e-18 96.3 85 57.6
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 6.6e-14 82.4 53 71.7
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 1.5e-13 81.3 64 62.5
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.3e-12 78.2 71 54.9
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.1e-11 75.1 80 51.2
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.6e-10 70.5 46 65.2
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.9e-09 67.0 119 35.3
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 1.8e-06 57.8 36 77.8


User provided reference genes

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