Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018700 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.7e-61 238.8 153 100.0
CSS0018321 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 5.9e-48 194.5 143 68.5
CSS0022719 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 3.3e-30 135.6 65 95.4
CSS0039319 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 3.3e-30 135.6 65 95.4
CSS0037916 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.3e-30 135.2 65 95.4
CSS0014539 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.6e-29 133.3 65 93.8
CSS0020327 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.7e-29 131.7 65 93.8
CsaV3_2G015120 Cucumis sativus L. HOM05D005091 ORTHO05D006047 1.0e-28 130.6 65 90.8
FvH4_2g09910 Fragaria vesca HOM05D005091 ORTHO05D006047 1.0e-28 130.6 65 89.2
FAN24G2910 Fragaria x ananassa HOM05D005091 ORTHO05D006047 1.0e-28 130.6 65 89.2
Gohir.A01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 1.0e-28 130.6 65 89.2
Gorai.002G004900 Gossypium raimondii HOM05D005091 ORTHO05D006047 1.0e-28 130.6 65 89.2
Dinv42028 Davidia involucrata HOM05D005091 ORTHO05D006047 1.4e-28 130.2 65 90.8
Phvul.011G210700 Phaseolus vulgaris HOM05D005091 ORTHO05D006047 1.4e-28 130.2 65 87.7
RcHm_v2.0_Chr6g0266641 Rosa chinensis HOM05D005091 ORTHO05D006047 1.4e-28 130.2 65 89.2
MELO3C023337.2 Cucumis melo HOM05D005091 ORTHO05D006047 2.3e-28 129.4 65 89.2
QL11p045411 Quercus lobata HOM05D005091 ORTHO05D006047 2.3e-28 129.4 65 89.2
COL.COLO4_26004 Corchorus olitorius HOM05D005091 ORTHO05D006047 3.1e-28 129.0 65 87.7
FAN20G0404 Fragaria x ananassa HOM05D005091 ORTHO05D006047 3.1e-28 129.0 65 87.7
Gohir.D01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 3.1e-28 129.0 65 87.7
Thecc.02G079100 Theobroma cacao HOM05D005091 ORTHO05D006047 3.1e-28 129.0 65 87.7
FAN15G1732 Fragaria x ananassa HOM05D005091 ORTHO05D006047 4.0e-28 128.6 65 87.7
vmacro17453 Vaccinium macrocarpon HOM05D005091 ORTHO05D006047 4.0e-28 128.6 65 89.2
Haze_02317 Corylus avellana HOM05D005091 ORTHO05D006047 5.2e-28 128.3 65 89.2
Eucgr.G01705 Eucalyptus grandis HOM05D005091 ORTHO05D006047 5.2e-28 128.3 65 87.7
Gohir.A04G124200 Gossypium hirsutum HOM05D005091 ORTHO05D006047 5.2e-28 128.3 65 86.2
Hma1.2p1_0066F.1_g036020 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 5.2e-28 128.3 65 87.7
Hma1.2p1_0066F.1_g036030 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 5.2e-28 128.3 65 87.7
Prupe.8G089300 Prunus persica HOM05D005091 ORTHO05D006047 5.2e-28 128.3 65 87.7
Rhsim05G0070500 Rhododendron simsii HOM05D005091 ORTHO05D006047 5.2e-28 128.3 65 89.2
Cc02_g17150 Coffea canephora HOM05D005091 ORTHO05D006047 6.8e-28 127.9 65 84.6
PGR042G2402 Punica granatum HOM05D005091 ORTHO05D006047 6.8e-28 127.9 65 87.7
Cpa.g.sc150.55 Carica papaya HOM05D005091 ORTHO05D006047 8.9e-28 127.5 65 86.2
Glyma.12G236400 Glycine max HOM05D005091 ORTHO05D006047 1.2e-27 127.1 65 86.2
Gohir.D04G166300 Gossypium hirsutum HOM05D005091 ORTHO05D006047 1.2e-27 127.1 65 86.2
Gorai.012G154700 Gossypium raimondii HOM05D005091 ORTHO05D006047 1.2e-27 127.1 65 86.2
Duzib132G0651 Durio zibethinus HOM05D005091 ORTHO05D006047 1.5e-27 126.7 65 86.2
Glyma.13G201900 Glycine max HOM05D005091 ORTHO05D006047 1.5e-27 126.7 65 86.2
Potri.004G160000 Populus trichocarpa HOM05D005091 ORTHO05D006047 1.5e-27 126.7 65 84.6
Sabra04G0107000 Salix brachista HOM05D005091 ORTHO05D006047 1.5e-27 126.7 65 84.6
TWI79G0003 Tripterygium wilfordii HOM05D005091 ORTHO05D006047 1.5e-27 126.7 65 87.7
GSVIVG01024219001 Vitis vinifera HOM05D005091 ORTHO05D006047 1.5e-27 126.7 65 86.2
CSS0016397 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.6e-27 125.9 65 90.8
CiPaw.05G070800 Carya illinoinensis HOM05D005091 ORTHO05D006047 2.6e-27 125.9 65 87.7
Actinidia02234 Actinidia chinensis HOM05D005091 ORTHO05D006047 3.4e-27 125.6 65 84.6
AL3G52590 Arabidopsis lyrata HOM05D005091 ORTHO05D006047 3.4e-27 125.6 65 80.0
CANSAT11G2456 Cannabis sativa HOM05D005091 ORTHO05D006047 3.4e-27 125.6 65 86.2
Ca_23899_v3 Cicer arietinum L. HOM05D005091 ORTHO05D006047 3.4e-27 125.6 65 84.6
Ciclev10028263m.g Citrus clementina HOM05D005091 ORTHO05D006047 3.4e-27 125.6 65 86.2
Lalb_Chr03g0034131 Lupinus albus HOM05D005091 ORTHO05D006047 3.4e-27 125.6 65 84.6
Peaxi162Scf00016g00337 Petunia axillaris HOM05D005091 ORTHO05D006047 3.4e-27 125.6 65 84.6
Psat4g148720 Pisum sativum HOM05D005091 ORTHO05D006047 3.4e-27 125.6 65 84.6
AT2G16405 Arabidopsis thaliana HOM05D005091 ORTHO05D006047 4.4e-27 125.2 65 80.0
Sed0016950 Sechium edule HOM05D005091 ORTHO05D006047 4.4e-27 125.2 65 87.7
TPR.G1894 Trifolium pratense HOM05D005091 ORTHO05D006047 5.8e-27 124.8 65 84.6
VMungo1127G0930 Vigna mungo HOM05D005091 ORTHO05D006047 5.8e-27 124.8 65 84.6
Lj3g0010610 Lotus japonicus HOM05D005091 ORTHO05D006047 7.5e-27 124.4 65 84.6
CiPaw.06G131700 Carya illinoinensis HOM05D005091 ORTHO05D006047 1.3e-26 123.6 65 84.6
Carub.0003s3018 Capsella rubella HOM05D005091 ORTHO05D006047 1.7e-26 123.2 65 78.5
Manes.12G155700 Manihot esculenta HOM05D005091 ORTHO05D006047 1.7e-26 123.2 65 83.1
BcaB03g16352 Brassica carinata HOM05D005091 ORTHO05D006047 2.2e-26 122.9 65 78.5
TAR381G0064 Trochodendron aralioides HOM05D005091 ORTHO05D006047 2.2e-26 122.9 65 84.6
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 2.9e-26 122.5 65 78.5
Sp3g29690 Schrenkiella parvula HOM05D005091 ORTHO05D006047 2.9e-26 122.5 65 78.5
Aqoxy6G01233 Aquilegia oxysepala HOM05D005091 ORTHO05D006047 3.7e-26 122.1 65 83.1
arahy.Tifrunner.gnm1.ann1.6QR9E7 Arachis hypogaea HOM05D005091 ORTHO05D006047 3.7e-26 122.1 65 80.0
arahy.Tifrunner.gnm1.ann1.PP2YAD Arachis hypogaea HOM05D005091 ORTHO05D006047 3.7e-26 122.1 65 80.0
CARHR106660 Cardamine hirsuta HOM05D005091 ORTHO05D006047 3.7e-26 122.1 65 78.5
Aa31LG8G13770 Aethionema arabicum HOM05D005091 ORTHO05D006047 4.9e-26 121.7 65 76.9
SalBow6G4139 Salvia bowleyana HOM05D005091 ORTHO05D006047 4.9e-26 121.7 65 81.5
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 4.9e-26 121.7 65 80.0
THA.LOC104807298 Tarenaya hassleriana HOM05D005091 ORTHO05D006047 4.9e-26 121.7 65 80.0
MBI01_g12681_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 6.4e-26 121.3 65 81.5
Nitab4.5_0005919g0020 Nicotiana tabacum HOM05D005091 ORTHO05D006047 6.4e-26 121.3 65 81.5
Nitab4.5_0009512g0060 Nicotiana tabacum HOM05D005091 ORTHO05D006047 6.4e-26 121.3 65 81.5
Solyc01g110030.3 Solanum lycopersicum HOM05D005091 ORTHO05D006047 6.4e-26 121.3 65 81.5
Sopen01g052220 Solanum pennellii HOM05D005091 ORTHO05D006047 6.4e-26 121.3 65 81.5
PGSC0003DMG400030963 Solanum tuberosum HOM05D005091 ORTHO05D006047 6.4e-26 121.3 65 81.5
SGA_v2.0_scaffold58G20494 Striga asiatica HOM05D005091 ORTHO05D006047 6.4e-26 121.3 65 80.0
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 84.6
BcaC06g36149 Brassica carinata HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 76.9
A07p04510 Brassica napus HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 76.9
C07p07220 Brassica napus HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 76.9
BolC7t41142H Brassica oleracea HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 76.9
BraA07t28242Z Brassica rapa HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 76.9
Migut.B00202 Erythranthe guttata HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 80.0
Lsat_1_v5_gn_9_107760 Lactuca sativa HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 80.0
Oeu041611.2 Olea europaea HOM05D005091 ORTHO05D006047 8.3e-26 120.9 65 80.0
Atru.chr5.3102 Acer truncatum HOM05D005091 ORTHO05D006047 1.1e-25 120.6 65 80.0
Nn5g29154 Nelumbo nucifera HOM05D005091 ORTHO05D006047 1.1e-25 120.6 65 83.1
Ah.01g019050 Amaranthus hybridus HOM05D005091 ORTHO05D006047 1.4e-25 120.2 65 78.5
PSO675G3543 Papaver somniferum HOM05D005091 ORTHO05D006047 1.9e-25 119.8 65 80.0
PSO541G2662 Papaver somniferum HOM05D005091 ORTHO05D006047 2.4e-25 119.4 65 80.0
Oeu004806.3 Olea europaea HOM05D005091 ORTHO05D006047 4.1e-25 118.6 61 83.6
DCAR_004295 Daucus carota HOM05D005091 ORTHO05D006047 5.4e-25 118.2 65 80.0
ECA236G1753 Erigeron canadensis HOM05D005091 ORTHO05D006047 5.4e-25 118.2 65 76.9
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 5.4e-25 118.2 65 80.0
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 5.4e-25 118.2 65 80.0
MSTRG.16832 Avicennia marina HOM05D005091 ORTHO05D006047 7.0e-25 117.9 65 76.9
Hund06247 Selenicereus undatus HOM05D005091 ORTHO05D006047 7.0e-25 117.9 65 75.4
EL10Ac9g21684 Beta vulgaris HOM05D005091 ORTHO05D006047 9.2e-25 117.5 65 76.9
Lsat_1_v5_gn_7_91761 Lactuca sativa HOM05D005091 ORTHO05D006047 1.2e-24 117.1 77 71.4
HanXRQChr04g0127771 Helianthus annuus HOM05D005091 ORTHO05D006047 1.6e-24 116.7 65 75.4
TAR625G0679 Trochodendron aralioides HOM05D005091 ORTHO05D006047 1.6e-24 116.7 65 80.0
unitig_21.g20796 Utricularia gibba HOM05D005091 ORTHO05D006047 1.6e-24 116.7 65 73.8
ClCG11G004080 Citrullus lanatus HOM05D005091 ORTHO05D006047 6.0e-24 114.8 89 65.2
SEGI_12567 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 6.0e-24 114.8 65 76.9
Pp3c21_5350 Physcomitrium patens HOM05D005091 ORTHO05D006047 3.9e-23 112.1 64 70.3
Zm00001eb151660 Zea mays HOM05D005091 ORTHO05D006047 5.0e-23 111.7 65 76.9
Os01g0776400 Oryza sativa ssp. japonica HOM05D005091 ORTHO05D006047 1.1e-22 110.5 65 75.4
MD05G1059400 Malus domestica HOM05D005091 ORTHO05D006047 5.6e-22 108.2 51 94.1
Medtr8g037340 Medicago truncatula HOM05D005091 ORTHO05D006047 1.6e-21 106.7 95 56.8
Potri.009G121100 Populus trichocarpa HOM05D005091 ORTHO05D006047 2.1e-21 106.3 65 73.8
AUR62016783 Chenopodium quinoa HOM05D005091 ORTHO05D006047 6.2e-21 104.8 86 57.0
MD10G1067500 Malus domestica HOM05D005091 ORTHO05D006047 6.8e-20 101.3 48 93.8
RcHm_v2.0_Chr6g0266811 Rosa chinensis HOM05D005091 ORTHO05D006047 2.0e-19 99.8 65 76.9
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 2.4e-17 92.8 65 56.9
Lj5C193G6 Lonicera japonica HOM05D005091 ORTHO05D006047 5.4e-17 91.7 49 81.6
AagrBONN_evm.TU.Sc2ySwM_344.1521 Anthoceros agrestis HOM05D005091 ORTHO05D006047 1.2e-16 90.5 64 56.2
CDE06G1738 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 1.6e-16 90.1 46 84.8
AUR62010439 Chenopodium quinoa HOM05D005091 ORTHO05D006047 6.0e-16 88.2 49 75.5
SMO232G0022 Selaginella moellendorffii HOM05D005091 ORTHO05D006047 7.8e-16 87.8 65 56.9
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 3.3e-14 82.4 48 72.9
Os04g0678300 Oryza sativa ssp. japonica HOM05D000645 ORTHO05D000494 1.7e-07 60.1 61 39.3
Zm00001eb433820 Zea mays HOM05D000645 ORTHO05D000494 6.6e-07 58.2 61 37.7
AL8G29430 Arabidopsis lyrata HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
AT5G54200 Arabidopsis thaliana HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
BcaB01g04283 Brassica carinata HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
BcaC01g06293 Brassica carinata HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
A03p14770 Brassica napus HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
BolC3t14139H Brassica oleracea HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
BraA03t10769Z Brassica rapa HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
CARHR267420 Cardamine hirsuta HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
Sp6g16260 Schrenkiella parvula HOM05D000645 ORTHO05D000494 1.9e-06 56.6 61 37.7
MSTRG.8637 Avicennia marina HOM05D000645 ORTHO05D000494 2.5e-06 56.2 44 50.0
BcaB08g35775 Brassica carinata HOM05D000645 ORTHO05D000494 2.5e-06 56.2 61 37.7
Carub.0008s1452 Capsella rubella HOM05D000645 ORTHO05D000494 2.5e-06 56.2 61 37.7
FvH4_3g20610 Fragaria vesca HOM05D000645 ORTHO05D000494 3.3e-06 55.8 61 37.7
FAN11G2895 Fragaria x ananassa HOM05D000645 ORTHO05D000494 3.3e-06 55.8 61 37.7
FAN16G0920 Fragaria x ananassa HOM05D000645 ORTHO05D000494 3.3e-06 55.8 61 37.7
FAN25G3556 Fragaria x ananassa HOM05D000645 ORTHO05D000494 3.3e-06 55.8 61 37.7
Actinidia27298 Actinidia chinensis HOM05D000645 ORTHO05D000494 4.3e-06 55.5 60 36.7
BcaC04g20361 Brassica carinata HOM05D000645 ORTHO05D000494 4.3e-06 55.5 61 37.7
FAN21G3471 Fragaria x ananassa HOM05D000645 ORTHO05D000494 4.3e-06 55.5 61 37.7
Peaxi162Scf00027g00311 Petunia axillaris HOM05D000645 ORTHO05D000494 5.6e-06 55.1 61 36.1
PGSC0003DMG400018521 Solanum tuberosum HOM05D000645 ORTHO05D000494 5.6e-06 55.1 60 40.0
Aa31LG3G10170 Aethionema arabicum HOM05D000645 ORTHO05D002822 7.3e-06 54.7 61 36.1
MSTRG.19087 Avicennia marina HOM05D000645 ORTHO05D000494 7.3e-06 54.7 61 37.7
A10p11520 Brassica napus HOM05D000645 ORTHO05D000494 7.3e-06 54.7 61 37.7
BraA10t43246Z Brassica rapa HOM05D000645 ORTHO05D000494 7.3e-06 54.7 61 37.7
CiPaw.12G121000 Carya illinoinensis HOM05D000645 ORTHO05D000494 7.3e-06 54.7 61 36.1
Sed0016673 Sechium edule HOM05D000645 ORTHO05D000494 7.3e-06 54.7 63 36.5
Nn1g06632 Nelumbo nucifera HOM05D000645 ORTHO05D000494 9.6e-06 54.3 61 36.1
Solyc03g082870.4 Solanum lycopersicum HOM05D000645 ORTHO05D000494 9.6e-06 54.3 60 38.3
Sopen03g022690 Solanum pennellii HOM05D000645 ORTHO05D000494 9.6e-06 54.3 57 38.6
Zm00001eb066110 Zea mays HOM05D000645 ORTHO05D000494 9.6e-06 54.3 52 42.3


User provided reference genes

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