Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 9.2e-56 219.9 107 100.0
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.8e-51 205.7 100 99.0
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 4.9e-49 197.6 100 93.0
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 7.1e-48 193.7 100 92.0
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 9.2e-48 193.4 99 90.9
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 1.2e-47 193.0 100 91.0
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 1.6e-47 192.6 100 91.0
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.6e-47 192.6 100 90.0
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 2.1e-47 192.2 100 90.0
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 3.5e-47 191.4 100 90.0
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 6.0e-47 190.7 100 88.0
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 6.0e-47 190.7 100 90.0
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 7.8e-47 190.3 100 88.0
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 1.0e-46 189.9 100 89.0
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 1.3e-46 189.5 100 88.0
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.3e-46 189.5 100 88.0
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 2.3e-46 188.7 100 89.0
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 2.3e-46 188.7 100 89.0
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 3.0e-46 188.3 100 87.0
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 3.0e-46 188.3 100 87.0
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 3.0e-46 188.3 100 89.0
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 3.9e-46 188.0 100 89.0
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 3.9e-46 188.0 100 87.0
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 5.1e-46 187.6 98 89.8
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 6.6e-46 187.2 100 87.0
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 6.6e-46 187.2 100 89.0
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 8.6e-46 186.8 100 87.0
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 8.6e-46 186.8 100 90.0
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.1e-45 186.4 100 88.0
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 1.1e-45 186.4 100 86.0
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 1.1e-45 186.4 100 88.0
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 1.5e-45 186.0 100 87.0
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 2.5e-45 185.3 100 85.0
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 5.6e-45 184.1 100 85.0
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 9.5e-45 183.3 100 84.0
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.2e-44 183.0 100 86.0
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 1.2e-44 183.0 100 84.0
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 1.6e-44 182.6 100 85.0
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 2.1e-44 182.2 100 84.0
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 4.7e-44 181.0 100 84.0
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 6.2e-44 180.6 100 85.0
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 6.2e-44 180.6 100 84.0
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 8.1e-44 180.3 100 85.0
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 8.1e-44 180.3 100 84.0
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 1.1e-43 179.9 100 83.0
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 1.1e-43 179.9 100 85.0
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 1.4e-43 179.5 100 85.0
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 1.8e-43 179.1 100 85.0
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.8e-43 179.1 100 82.0
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 3.1e-43 178.3 100 83.0
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 4.0e-43 177.9 100 84.0
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.0e-43 177.9 100 84.0
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 4.0e-43 177.9 100 85.0
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 5.2e-43 177.6 100 83.0
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 5.2e-43 177.6 100 84.0
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 8.9e-43 176.8 100 81.0
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 8.9e-43 176.8 100 81.0
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.5e-42 176.0 100 80.0
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 2.0e-42 175.6 133 68.4
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 2.6e-42 175.3 105 81.9
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 2.6e-42 175.3 100 80.0
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 4.4e-42 174.5 100 82.0
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 9.9e-42 173.3 100 81.0
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 9.9e-42 173.3 100 81.0
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 9.9e-42 173.3 100 81.0
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 9.9e-42 173.3 100 81.0
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 9.9e-42 173.3 100 81.0
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 9.9e-42 173.3 100 81.0
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 9.9e-42 173.3 100 81.0
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.3e-41 172.9 100 79.0
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 1.7e-41 172.6 100 80.0
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.7e-41 172.6 100 80.0
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 2.2e-41 172.2 98 81.6
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 2.9e-41 171.8 100 80.0
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 2.9e-41 171.8 100 80.0
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 3.8e-41 171.4 100 80.0
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 1.1e-40 169.9 100 80.0
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.1e-40 169.9 100 79.0
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 2.4e-40 168.7 98 80.6
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 2.4e-40 168.7 100 78.0
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 2.4e-40 168.7 100 77.0
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 4.1e-40 167.9 100 79.0
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.1e-40 167.9 115 73.0
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.1e-40 167.9 115 73.0
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 9.2e-40 166.8 100 77.0
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.2e-39 166.4 115 72.2
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 1.2e-39 166.4 105 73.3
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.6e-39 166.0 97 76.3
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 4.6e-39 164.5 99 76.8
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 1.3e-38 162.9 129 65.1
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 3.9e-38 161.4 100 73.0
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 3.9e-38 161.4 100 73.0
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 3.9e-38 161.4 100 73.0
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 3.3e-37 158.3 127 63.8
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 2.1e-36 155.6 100 73.0
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 3.6e-36 154.8 100 69.0
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 9.0e-35 150.2 119 62.2
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 1.7e-33 146.0 99 66.7
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 5.4e-32 141.0 143 51.0
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 4.6e-31 137.9 98 65.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.7e-30 136.0 75 86.7
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 5.1e-30 134.4 75 86.7
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 6.6e-30 134.0 100 60.0
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 2.8e-28 128.6 80 70.0
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 8.1e-28 127.1 67 85.1
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 2.4e-27 125.6 67 85.1
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 4.0e-27 124.8 98 64.3
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 2.6e-26 122.1 67 83.6
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 1.2e-23 113.2 69 75.4
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 3.5e-23 111.7 100 51.0
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 3.0e-22 108.6 74 63.5
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.4e-19 99.0 98 54.1
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 1.2e-18 96.7 50 84.0
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 9.9e-18 93.6 52 75.0
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 9.9e-18 93.6 70 62.9
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.2e-17 92.4 69 60.9
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.2e-17 92.4 69 60.9
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.9e-17 92.0 52 76.9
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 3.8e-17 91.7 51 80.4
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 4.9e-17 91.3 52 75.0
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.4e-17 90.5 52 75.0
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.9e-16 89.4 51 76.5
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 8.7e-14 80.5 52 57.7
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 5.6e-13 77.8 42 83.3
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 5.6e-13 77.8 45 80.0
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 1.5e-10 69.7 89 48.3
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 3.8e-09 65.1 50 70.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 3.8e-09 65.1 50 70.0


User provided reference genes

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