Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018691 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D018297 2.2e-76 288.9 145 100.0
CSS0039025 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D018297 5.4e-75 284.3 145 98.6
CSS0032204 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 6.8e-54 214.2 113 96.5
CSS0017036 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 1.5e-29 133.3 116 68.1
Actinidia15513 Actinidia chinensis HOM05D000190 ORTHO05D000113 3.4e-29 132.1 113 69.9
Dinv31974 Davidia involucrata HOM05D000190 ORTHO05D000113 3.2e-27 125.6 107 68.2
TAR376G0267 Trochodendron aralioides HOM05D000190 ORTHO05D000113 5.1e-25 118.2 119 63.0
Hma1.2p1_0699F.1_g205610 Hydrangea macrophylla HOM05D000190 ORTHO05D000113 8.7e-25 117.5 106 66.0
Cfa007101 Carpinus fangiana HOM05D000190 ORTHO05D000113 1.5e-24 116.7 119 60.5
MD06G1006000 Malus domestica HOM05D000190 ORTHO05D018297 1.5e-24 116.7 102 68.6
Haze_03629 Corylus avellana HOM05D000190 ORTHO05D000113 1.3e-23 113.6 123 56.1
Manes.05G125400 Manihot esculenta HOM05D000190 ORTHO05D000113 2.8e-23 112.5 115 60.9
Prupe.5G007700 Prunus persica HOM05D000190 ORTHO05D000113 3.7e-23 112.1 102 66.7
GSVIVG01013406001 Vitis vinifera HOM05D000190 ORTHO05D000113 1.4e-22 110.2 119 56.3
Lj4A810T50 Lonicera japonica HOM05D000190 ORTHO05D000113 2.4e-22 109.4 105 65.7
arahy.Tifrunner.gnm1.ann1.XPJ3VE Arachis hypogaea HOM05D000190 ORTHO05D000113 3.1e-22 109.0 106 64.2
Eucgr.I02213 Eucalyptus grandis HOM05D000190 ORTHO05D000113 5.3e-22 108.2 100 67.0
TAR628G0292 Trochodendron aralioides HOM05D000190 ORTHO05D000113 5.3e-22 108.2 120 57.5
QL02p015265 Quercus lobata HOM05D000190 ORTHO05D018297 6.9e-22 107.8 109 62.4
Dinv40204 Davidia involucrata HOM05D000190 ORTHO05D000113 9.0e-22 107.5 98 66.3
Glyma.04G015700 Glycine max HOM05D000190 ORTHO05D000113 1.5e-21 106.7 108 61.1
RcHm_v2.0_Chr4g0399511 Rosa chinensis HOM05D000190 ORTHO05D000113 2.0e-21 106.3 113 60.2
RcHm_v2.0_Chr7g0216251 Rosa chinensis HOM05D000190 ORTHO05D000113 2.0e-21 106.3 113 60.2
ECA238G1592 Erigeron canadensis HOM05D000190 ORTHO05D000113 2.6e-21 105.9 116 56.0
FvH4_5g25790 Fragaria vesca HOM05D000190 ORTHO05D000113 2.6e-21 105.9 98 65.3
FAN18G1374 Fragaria x ananassa HOM05D000190 ORTHO05D000113 2.6e-21 105.9 98 65.3
TWI12G1370 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 2.6e-21 105.9 112 58.0
Cpa.g.sc26.157 Carica papaya HOM05D000190 ORTHO05D000113 4.5e-21 105.1 92 65.2
Cc10_g00390 Coffea canephora HOM05D000190 ORTHO05D000113 4.5e-21 105.1 112 59.8
FAN04G1758 Fragaria x ananassa HOM05D000190 ORTHO05D000113 4.5e-21 105.1 98 65.3
FAN08G3670 Fragaria x ananassa HOM05D000190 ORTHO05D000113 4.5e-21 105.1 98 65.3
TWI36G1745 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 5.8e-21 104.8 89 65.2
MBI08_g48231_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 1.3e-20 103.6 105 61.0
VMungo1309G0142 Vigna mungo HOM05D000190 ORTHO05D000113 2.9e-20 102.4 98 63.3
Lsat_1_v5_gn_2_1460 Lactuca sativa HOM05D000190 ORTHO05D000113 4.9e-20 101.7 110 53.6
Phvul.009G006800 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 8.4e-20 100.9 102 60.8
PGR119G0886 Punica granatum HOM05D000190 ORTHO05D000113 1.1e-19 100.5 107 59.8
Glyma.06G015700 Glycine max HOM05D000190 ORTHO05D000113 1.4e-19 100.1 109 58.7
QL06p053252 Quercus lobata HOM05D000190 ORTHO05D018297 1.4e-19 100.1 94 62.8
Potri.005G254300 Populus trichocarpa HOM05D000190 ORTHO05D000113 1.9e-19 99.8 112 53.6
HanXRQChr06g0185291 Helianthus annuus HOM05D000190 ORTHO05D000113 3.2e-19 99.0 117 53.8
Cc07_g12040 Coffea canephora HOM05D000190 ORTHO05D000113 4.2e-19 98.6 128 53.1
Aqoxy6G01569 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 9.3e-19 97.4 91 62.6
Aqoxy6G01575 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 9.3e-19 97.4 91 62.6
Ca_15396_v3 Cicer arietinum L. HOM05D000190 ORTHO05D000113 9.3e-19 97.4 102 58.8
Gohir.A01G102800 Gossypium hirsutum HOM05D000190 ORTHO05D000113 9.3e-19 97.4 105 56.2
Thecc.08G063400 Theobroma cacao HOM05D000190 ORTHO05D000113 9.3e-19 97.4 111 53.2
ATR0807G219 Amborella trichopoda HOM05D000190 ORTHO05D018297 1.2e-18 97.1 110 54.5
COL.COLO4_05642 Corchorus olitorius HOM05D000190 ORTHO05D000113 3.5e-18 95.5 105 59.0
Lj1g0000686 Lotus japonicus HOM05D000190 ORTHO05D000113 3.5e-18 95.5 104 59.6
PSO675G8011 Papaver somniferum HOM05D000190 ORTHO05D000113 4.6e-18 95.1 91 61.5
Gohir.D01G088100 Gossypium hirsutum HOM05D000190 ORTHO05D000113 1.8e-17 93.2 105 54.3
Gorai.002G113800 Gossypium raimondii HOM05D000190 ORTHO05D000113 1.8e-17 93.2 111 49.5
Ciclev10003446m.g Citrus clementina HOM05D000190 ORTHO05D000113 2.3e-17 92.8 113 54.0
HanXRQChr14g0427871 Helianthus annuus HOM05D000190 ORTHO05D000113 2.3e-17 92.8 119 47.9
Manes.01G156700 Manihot esculenta HOM05D000190 ORTHO05D000113 1.1e-16 90.5 99 58.6
Potri.002G007000 Populus trichocarpa HOM05D000190 ORTHO05D000113 1.1e-16 90.5 118 53.4
TPR.G38094 Trifolium pratense HOM05D000190 ORTHO05D018297 1.1e-16 90.5 102 55.9
Medtr3g115940 Medicago truncatula HOM05D000190 ORTHO05D000113 1.5e-16 90.1 102 55.9
Psat5g010400 Pisum sativum HOM05D000190 ORTHO05D000113 1.5e-16 90.1 102 56.9
Migut.N02974 Erythranthe guttata HOM05D000190 ORTHO05D000113 2.5e-16 89.4 113 52.2
Duzib093G1928 Durio zibethinus HOM05D000190 ORTHO05D000113 5.7e-16 88.2 107 55.1
Haze_22840 Corylus avellana HOM05D000190 ORTHO05D000113 1.6e-15 86.7 109 52.3
PSO541G6544 Papaver somniferum HOM05D000190 ORTHO05D000113 1.6e-15 86.7 91 59.3
SalBow6G4045 Salvia bowleyana HOM05D000190 ORTHO05D000113 6.3e-15 84.7 103 54.4
Atru.chr3.30 Acer truncatum HOM05D000190 ORTHO05D000113 1.4e-14 83.6 86 60.5
SEGI_32757 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 9.0e-14 80.9 98 49.0
DCAR_014304 Daucus carota HOM05D000190 ORTHO05D000113 1.5e-13 80.1 96 55.2
Potri.007G064200 Populus trichocarpa HOM05D000190 ORTHO05D000113 1.5e-13 80.1 113 47.8
Atru.chr13.89 Acer truncatum HOM05D000190 ORTHO05D000113 2.6e-13 79.3 68 63.2
SEGI_23004 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 5.9e-13 78.2 98 50.0
SEGI_23838 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 1.0e-12 77.4 98 51.0
Lj4C6T6 Lonicera japonica HOM05D000190 ORTHO05D000113 1.7e-12 76.6 107 46.7
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 6.5e-12 74.7 73 61.6
Os03g0129100 Oryza sativa ssp. japonica HOM05D000190 ORTHO05D000113 5.5e-11 71.6 83 51.8
PGR031G3958 Punica granatum HOM05D000190 ORTHO05D000113 2.1e-10 69.7 102 46.1
Zm00001eb002250 Zea mays HOM05D000190 ORTHO05D000113 1.8e-09 66.6 98 45.9
SEGI_28361 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 1.1e-08 63.9 98 44.9
Rhsim10G0192600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.5e-08 63.5 111 41.4
TAR626G1037 Trochodendron aralioides HOM05D000190 ORTHO05D000113 9.7e-08 60.8 49 73.5
TAR629G0104 Trochodendron aralioides HOM05D000190 ORTHO05D000113 1.3e-07 60.5 49 73.5
MBI08_g06889_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 4.8e-07 58.5 70 54.3
TAR102G0003 Trochodendron aralioides HOM05D000190 ORTHO05D000113 6.3e-07 58.2 49 73.5
TAR636G1217 Trochodendron aralioides HOM05D000190 ORTHO05D000113 6.3e-07 58.2 49 73.5
ATR0807G227 Amborella trichopoda HOM05D000190 ORTHO05D000113 1.4e-06 57.0 105 41.0
Glyma.16G145500 Glycine max HOM05D000190 ORTHO05D000113 4.1e-06 55.5 119 34.5
Oeu017906.1 Olea europaea HOM05D000190 ORTHO05D018297 4.1e-06 55.5 100 42.0
Os06g0486300 Oryza sativa ssp. japonica HOM05D000190 ORTHO05D000113 4.1e-06 55.5 83 42.2
Sp1g09960 Schrenkiella parvula HOM05D000190 ORTHO05D000113 4.1e-06 55.5 89 43.8
TAR629G1554 Trochodendron aralioides HOM05D000190 ORTHO05D000113 5.3e-06 55.1 49 73.5
Lj2C502G9 Lonicera japonica HOM05D000190 ORTHO05D000113 6.9e-06 54.7 121 39.7
Rhsim05G0183800 Rhododendron simsii HOM05D000190 ORTHO05D000113 6.9e-06 54.7 83 41.0


User provided reference genes

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