Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 0.0e+00 1431.0 764 100.0
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 0.0e+00 1154.0 765 78.4
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 0.0e+00 1116.7 737 79.9
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 0.0e+00 1113.6 806 74.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.5e-309 1063.5 767 73.9
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.4e-294 1016.1 770 69.0
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 5.4e-291 1004.2 766 68.5
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.3e-289 998.8 765 67.3
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.4e-286 989.6 766 67.8
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.7e-284 982.6 748 68.7
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 4.9e-284 981.1 761 66.9
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 3.2e-283 978.4 769 66.7
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 7.0e-283 977.2 782 65.6
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 8.0e-279 963.8 764 67.3
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.8e-278 962.6 766 64.9
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 6.8e-278 960.7 759 67.7
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 2.0e-277 959.1 764 66.4
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 7.5e-277 957.2 765 65.5
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.3e-276 956.4 767 64.7
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 2.4e-275 952.2 761 65.8
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 7.0e-275 950.7 765 65.2
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.7e-273 946.0 770 65.2
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.3e-273 945.7 759 66.0
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 5.0e-273 944.5 773 65.5
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 5.6e-272 941.0 765 65.5
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.3e-272 940.6 776 64.4
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.2e-271 939.9 767 66.2
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.1e-270 936.8 766 64.4
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 1.8e-270 936.0 765 65.5
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 8.9e-270 933.7 769 63.7
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.2e-269 933.3 752 69.5
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.5e-269 932.9 765 64.7
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 2.2e-268 929.1 769 63.6
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 2.4e-267 925.6 767 64.7
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.6e-266 921.4 759 64.4
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 7.8e-266 920.6 767 64.7
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.7e-265 919.5 762 63.3
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 4.3e-264 914.8 766 64.2
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 5.6e-264 914.4 773 63.5
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 6.2e-263 911.0 767 64.9
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.1e-262 910.2 771 63.2
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.4e-262 909.8 763 62.3
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.8e-262 909.4 714 66.7
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 4.0e-262 908.3 715 66.6
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 3.4e-261 905.2 769 62.3
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 2.9e-260 902.1 773 61.8
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.1e-259 900.2 772 62.2
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 3.2e-259 898.7 775 61.3
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 8.6e-257 890.6 765 61.4
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.9e-256 889.4 789 60.2
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 5.6e-256 887.9 765 61.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 7.3e-256 887.5 744 64.1
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 9.6e-256 887.1 766 62.0
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 2.6e-253 879.0 765 60.7
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 9.9e-253 877.1 771 60.7
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.7e-252 876.3 767 61.9
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 2.9e-252 875.5 770 60.9
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.8e-252 875.2 770 60.6
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 7.1e-251 870.9 763 60.9
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 9.3e-251 870.5 784 59.3
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.2e-250 870.2 770 60.9
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 2.1e-250 869.4 768 60.2
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 3.0e-249 865.5 787 59.7
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.1e-248 863.6 767 59.6
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 1.1e-248 863.6 766 60.3
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.5e-248 863.2 763 59.2
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 4.3e-248 861.7 789 59.3
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 5.6e-248 861.3 737 66.5
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 7.3e-248 860.9 763 60.0
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 7.3e-248 860.9 786 59.2
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.4e-246 856.7 766 60.3
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.9e-243 846.3 788 58.2
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.4e-243 845.9 788 58.5
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 3.2e-243 845.5 779 58.9
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 4.2e-243 845.1 741 61.1
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.8e-241 839.7 769 58.0
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 5.8e-237 824.7 694 63.3
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 9.9e-237 823.9 767 58.5
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 7.1e-235 817.8 766 58.4
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 6.7e-233 811.2 577 71.1
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.9e-232 809.7 807 55.3
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 1.2e-226 790.4 733 58.9
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 2.3e-225 786.2 732 58.5
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.0e-225 785.8 574 69.2
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.6e-223 780.0 516 78.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.1e-222 777.3 566 71.2
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.9e-221 771.5 765 55.8
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.7e-218 762.7 569 68.9
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 7.9e-218 761.1 573 68.4
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.0e-217 760.8 766 53.4
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.9e-217 758.8 769 55.0
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 8.2e-215 751.1 569 68.5
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 6.9e-214 748.0 569 67.8
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 5.9e-213 745.0 763 52.9
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.1e-211 740.7 759 55.3
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.4e-206 723.0 648 59.0
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 3.1e-206 722.6 744 53.9
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 3.4e-205 719.2 571 66.0
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.4e-203 713.8 711 57.0
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.7e-202 709.5 530 70.9
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.3e-201 706.4 461 78.3
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 1.5e-200 703.7 529 69.0
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 3.1e-198 696.0 658 55.8
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.7e-192 675.2 765 51.8
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 4.5e-189 665.6 586 59.9
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 8.0e-178 628.2 767 49.0
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-161 574.3 533 57.0
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 8.9e-161 571.6 784 41.3
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 3.7e-159 566.2 506 59.5
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 4.3e-155 552.7 598 50.3
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.3e-132 478.0 439 56.3
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 2.0e-128 464.2 333 70.3
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.5e-120 438.0 291 77.7
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 5.5e-118 429.5 567 46.6
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 4.6e-117 426.4 491 49.5
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 5.1e-116 422.9 326 66.9
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.2e-112 411.8 390 57.4
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 7.1e-110 402.5 479 50.5
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 6.7e-108 396.0 284 70.1
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.2e-106 391.0 814 31.7
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 5.0e-95 353.2 290 64.5
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.8e-92 344.7 749 31.9
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 5.7e-91 339.7 269 68.4
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.2e-87 327.8 356 48.9
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.9e-87 327.4 763 30.7
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.8e-84 318.2 230 71.7
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-76 292.0 178 81.5
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 5.0e-71 273.5 218 61.9
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 2.0e-64 251.5 204 63.2
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 1.5e-59 235.3 639 27.4
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.2e-58 231.5 436 37.6
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-57 229.2 418 37.6
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 8.0e-45 186.4 245 45.7
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.5e-43 182.2 141 68.1
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.4e-41 175.6 186 51.6
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 4.6e-32 144.1 244 39.8
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 1.2e-29 136.0 108 71.3
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 2.9e-26 124.8 187 40.6
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 7.1e-25 120.2 88 70.5
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 6.0e-24 117.1 93 62.4
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 6.0e-24 117.1 92 64.1
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.8e-20 105.5 147 41.5
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.8e-20 105.5 199 38.7
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-19 102.4 76 69.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 7.1e-17 93.6 167 37.7
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.0e-15 88.2 68 66.2
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 6.9e-12 77.0 105 36.2
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 2.4e-09 68.6 119 34.5
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 1.6e-08 65.9 73 47.9
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 2.3e-07 62.0 108 39.8
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 9.6e-06 56.6 46 60.9


User provided reference genes

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