Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.3e-98 363.2 207 100.0
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.6e-56 223.4 207 62.3
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 7.0e-52 208.0 209 59.3
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.1e-48 196.4 207 58.9
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 4.0e-47 192.2 206 56.3
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 6.8e-47 191.4 208 57.7
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 4.4e-46 188.7 208 55.3
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.4e-46 188.7 209 55.5
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 9.8e-46 187.6 207 56.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 1.3e-45 187.2 207 57.0
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.1e-44 184.1 207 55.6
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.1e-44 182.6 209 57.9
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 4.1e-44 182.2 207 52.2
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 9.2e-44 181.0 216 51.4
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.0e-43 179.9 208 55.3
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.7e-43 179.5 207 54.6
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 5.9e-43 178.3 206 51.0
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.8e-43 177.9 205 55.1
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.9e-42 176.0 204 51.5
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.9e-42 176.0 197 56.3
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.8e-42 175.6 205 52.2
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 6.6e-42 174.9 207 50.7
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.5e-41 173.7 212 56.1
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 7.3e-41 171.4 211 53.1
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 7.3e-41 171.4 205 54.1
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.1e-40 169.9 222 48.6
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.6e-40 169.1 220 50.0
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.6e-40 169.1 196 56.6
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.7e-40 168.7 212 51.4
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-39 166.8 203 51.2
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.8e-39 166.8 212 48.6
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-39 166.0 204 50.5
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 3.0e-39 166.0 208 53.4
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.0e-39 165.6 203 50.2
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 4.0e-39 165.6 203 48.8
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 4.0e-39 165.6 214 53.3
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.2e-39 165.2 204 51.0
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 5.2e-39 165.2 217 52.1
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-38 164.1 203 50.2
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.2e-38 164.1 208 50.5
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.2e-38 164.1 212 51.4
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.5e-38 163.7 214 51.9
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.0e-38 163.3 196 52.6
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.6e-38 162.9 203 50.2
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-38 162.9 203 50.2
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.6e-38 162.9 203 50.2
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.4e-38 162.5 210 53.8
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 5.8e-38 161.8 204 50.0
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 5.8e-38 161.8 221 51.6
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 7.5e-38 161.4 213 49.8
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 9.8e-38 161.0 217 48.4
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.7e-37 160.2 203 50.2
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.7e-37 160.2 203 50.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.9e-37 159.5 203 49.3
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.9e-37 159.5 210 52.9
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 2.9e-37 159.5 216 49.1
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 4.9e-37 158.7 219 47.5
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.9e-37 158.7 210 52.9
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.4e-37 158.3 206 50.5
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 8.3e-37 157.9 186 60.8
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 2.4e-36 156.4 206 49.5
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.4e-36 156.4 203 50.2
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.4e-36 156.4 208 51.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 4.1e-36 155.6 200 50.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.1e-36 155.6 206 50.0
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 7.0e-36 154.8 204 49.0
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.6e-35 153.7 210 46.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.0e-35 153.3 220 46.4
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.7e-35 152.9 220 48.6
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.6e-35 152.1 216 48.6
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 7.8e-35 151.4 225 46.7
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 7.8e-35 151.4 202 50.5
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-34 150.6 204 48.0
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.7e-34 150.2 218 45.4
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.3e-34 149.8 208 51.4
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.0e-34 149.4 229 43.7
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.0e-34 148.7 220 47.3
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 6.6e-34 148.3 225 46.7
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 6.6e-34 148.3 201 48.8
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-33 147.5 227 48.5
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.9e-33 146.7 195 49.7
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.9e-33 146.7 214 51.9
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 2.5e-33 146.4 210 47.6
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 9.5e-33 144.4 201 44.3
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.6e-32 143.7 220 45.0
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.6e-32 143.7 209 45.0
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.1e-32 143.3 221 47.5
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.1e-32 143.3 190 50.0
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 3.6e-32 142.5 220 47.3
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 4.7e-32 142.1 203 45.3
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-31 141.0 204 49.5
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.1e-31 141.0 204 49.5
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.4e-31 140.6 207 46.4
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.4e-31 140.6 220 51.8
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.1e-31 139.4 204 49.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.2e-31 138.7 224 40.2
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 5.2e-31 138.7 176 55.1
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 6.8e-31 138.3 177 49.7
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.9e-31 137.9 176 51.1
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.5e-30 137.1 208 47.6
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.4e-30 136.0 225 42.7
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 3.4e-30 136.0 226 45.6
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 9.8e-30 134.4 194 46.4
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 9.8e-30 134.4 232 46.1
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 9.8e-30 134.4 211 44.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.3e-29 134.0 221 45.2
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.1e-28 131.0 196 45.9
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-28 131.0 258 39.9
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 3.2e-28 129.4 196 46.4
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 5.4e-28 128.6 177 48.6
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 9.2e-28 127.9 218 44.5
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-27 127.5 177 48.6
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.2e-27 127.5 170 53.5
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.5e-27 125.9 209 43.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.5e-27 125.9 224 43.3
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 4.6e-27 125.6 203 42.4
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 7.8e-27 124.8 211 44.1
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.0e-26 124.4 212 40.6
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.7e-26 123.6 205 41.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.7e-26 123.6 199 41.2
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.9e-25 120.2 219 41.6
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.3e-25 119.0 197 52.8
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 7.3e-25 118.2 219 43.4
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 3.6e-24 115.9 210 47.6
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 6.2e-24 115.2 131 53.4
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 8.1e-24 114.8 204 41.2
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.1e-23 114.4 206 43.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 6.8e-23 111.7 203 45.8
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 8.9e-23 111.3 207 38.6
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.2e-22 110.9 255 39.2
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.4e-22 109.4 233 37.3
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 4.4e-22 109.0 205 45.4
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.4e-22 109.0 190 43.2
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 5.8e-22 108.6 199 38.7
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.3e-21 107.5 195 43.1
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-21 107.1 198 42.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-21 107.1 198 42.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.7e-21 107.1 198 42.9
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.2e-21 106.7 198 40.4
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.9e-21 106.3 197 41.6
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.9e-21 106.3 211 39.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 4.9e-21 105.5 203 42.4
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 8.3e-21 104.8 237 34.6
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 5.4e-20 102.1 205 40.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 9.2e-20 101.3 194 41.8
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 9.2e-20 101.3 146 47.3
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 2.1e-19 100.1 219 41.1
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.7e-19 99.8 207 41.1
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 7.8e-19 98.2 83 66.3
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-18 97.4 176 38.6
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.3e-18 97.4 176 38.6
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.9e-18 95.9 194 40.2
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.1e-17 94.4 207 33.8
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.5e-17 94.0 207 33.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-17 93.6 177 40.1
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.9e-17 93.6 126 47.6
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.3e-17 91.7 200 37.5
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 7.3e-17 91.7 203 37.4
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 4.7e-16 89.0 175 40.0
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 4.7e-16 89.0 175 40.0
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 8.1e-16 88.2 209 35.4
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 2.0e-14 83.6 177 40.7
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.0e-14 83.6 171 40.4
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 9.9e-14 81.3 75 58.7
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 2.2e-13 80.1 228 32.9
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 2.2e-13 80.1 196 34.2
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 7.1e-12 75.1 211 36.0
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 3.0e-10 69.7 58 63.8
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.1e-09 67.8 184 29.9
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.6e-08 63.9 206 34.0
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 4.7e-08 62.4 189 29.6
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 8.1e-08 61.6 59 61.0
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.4e-07 60.8 206 33.5
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 1.8e-07 60.5 185 29.2
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 5.3e-07 58.9 196 31.6
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 9.0e-07 58.2 173 33.5
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 2.0e-06 57.0 170 32.9
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.4e-06 55.8 129 35.7
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 5.8e-06 55.5 188 28.2


User provided reference genes

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