Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.8e-214 748.4 398 100.0
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-152 542.7 308 96.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-143 513.1 394 74.4
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.2e-130 468.8 403 66.7
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 8.0e-129 464.5 391 67.8
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 3.7e-118 429.1 342 72.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.7e-118 429.1 396 64.6
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.5e-111 407.1 397 62.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.5e-106 390.6 404 60.1
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 2.5e-106 389.8 404 60.6
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 4.3e-106 389.0 397 61.2
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 7.3e-106 388.3 403 60.3
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.4e-104 384.0 414 58.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.4e-104 384.0 397 60.7
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 2.3e-104 383.3 403 59.1
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 5.2e-104 382.1 396 57.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 6.8e-104 381.7 388 59.3
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 8.9e-104 381.3 386 60.4
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 9.8e-103 377.9 402 58.5
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.7e-102 375.9 400 57.5
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 8.3e-102 374.8 402 59.2
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 7.0e-101 371.7 325 64.6
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.2e-101 371.3 359 62.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.5e-100 369.4 390 58.7
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 7.8e-100 368.2 386 59.3
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 5.0e-99 365.5 406 57.1
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.2e-97 360.9 400 56.2
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.8e-97 359.8 407 58.5
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.1e-96 357.8 406 55.7
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 3.1e-96 356.3 404 55.7
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.1e-96 356.3 411 54.7
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 8.9e-96 354.8 410 56.6
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.2e-95 354.4 387 55.0
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 3.4e-95 352.8 401 55.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 4.4e-95 352.4 410 56.3
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 9.8e-95 351.3 397 57.2
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.2e-94 350.1 394 58.4
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.4e-93 346.7 376 58.0
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.1e-92 343.6 398 55.0
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 6.0e-92 342.0 399 54.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 7.8e-92 341.7 409 52.8
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.3e-91 340.1 379 55.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 3.0e-91 339.7 412 55.3
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.1e-90 337.8 354 56.2
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.5e-90 337.4 385 54.8
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.9e-90 337.0 389 54.0
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 9.5e-90 334.7 389 53.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.2e-89 334.3 389 53.5
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.6e-89 332.8 354 56.2
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 3.1e-88 329.7 409 51.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.5e-87 327.4 354 55.9
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.4e-87 326.2 301 62.1
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 4.4e-87 325.9 398 54.8
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.4e-87 325.9 412 52.4
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 5.8e-87 325.5 398 54.8
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.7e-86 322.8 391 52.4
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 3.7e-86 322.8 409 53.5
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 5.4e-85 318.9 413 53.0
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 9.2e-85 318.2 395 52.2
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.6e-84 317.4 410 52.7
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.6e-84 317.4 402 52.2
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.1e-84 317.0 382 52.6
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.5e-84 316.2 401 53.4
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 2.3e-83 313.5 416 52.9
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 3.9e-83 312.8 408 52.2
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.5e-82 310.1 323 60.1
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 5.6e-82 308.9 317 58.0
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 5.6e-82 308.9 402 50.7
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.8e-80 303.9 402 51.5
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 2.4e-80 303.5 368 53.0
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.2e-80 302.4 404 51.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.4e-79 299.7 345 57.4
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.2e-78 297.0 405 48.9
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 6.4e-78 295.4 394 49.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 6.4e-78 295.4 385 50.4
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 6.4e-78 295.4 419 50.8
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.4e-77 293.5 396 50.5
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 4.6e-76 289.3 359 53.2
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.6e-76 289.3 397 50.1
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 6.0e-76 288.9 321 54.8
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.0e-75 286.6 379 52.8
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.9e-74 283.9 412 48.3
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 7.3e-74 282.0 378 48.1
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.3e-73 281.2 412 47.8
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 6.2e-73 278.9 412 48.1
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 5.3e-72 275.8 349 51.3
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 5.3e-72 275.8 373 52.3
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.7e-70 270.8 381 47.0
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 8.4e-70 268.5 378 49.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.4e-69 267.7 273 62.6
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.4e-69 267.7 273 62.6
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.2e-68 264.6 395 45.8
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 4.6e-68 262.7 342 54.4
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 7.9e-68 261.9 375 51.2
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.3e-67 261.2 399 45.4
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.3e-67 260.4 334 53.9
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.0e-67 260.0 406 45.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 3.0e-67 260.0 336 55.1
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 5.1e-67 259.2 371 50.1
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 5.1e-67 259.2 397 45.6
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 5.1e-67 259.2 378 48.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.1e-66 258.1 306 56.2
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 7.3e-66 255.4 375 50.1
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.6e-65 254.2 394 45.4
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.8e-65 253.4 273 60.8
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 8.1e-65 251.9 369 49.9
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 8.1e-65 251.9 369 49.9
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 5.3e-64 249.2 369 49.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 5.3e-64 249.2 285 55.8
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 9.0e-64 248.4 369 49.9
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.2e-63 248.1 330 52.7
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.2e-62 243.8 407 44.7
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 2.4e-61 240.4 401 47.4
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.5e-58 230.3 341 43.7
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.6e-57 227.6 356 44.7
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.7e-57 226.5 403 43.4
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-56 224.2 198 69.2
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-56 224.2 198 69.2
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 9.0e-56 221.9 298 51.3
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.2e-54 217.2 364 41.5
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.9e-53 214.2 210 63.8
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 5.5e-53 212.6 316 46.2
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.8e-51 207.6 291 48.1
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 6.3e-49 199.1 176 60.2
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 9.0e-48 195.3 222 54.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.2e-46 190.7 369 39.6
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-44 183.0 194 59.8
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-43 181.8 194 59.8
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-43 181.4 194 59.3
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-43 181.0 194 59.3
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.1e-43 179.5 194 58.8
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 5.1e-43 179.5 286 43.7
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.7e-43 179.1 194 59.3
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 6.7e-43 179.1 415 38.6
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 3.3e-42 176.8 248 53.2
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-41 174.1 124 73.4
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 2.2e-41 174.1 416 37.5
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.3e-38 164.9 331 39.3
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.1e-35 152.9 194 52.6
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.4e-32 144.8 106 72.6
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.4e-31 140.2 252 41.3
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 5.9e-31 139.4 201 46.8
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 1.3e-30 138.3 184 49.5
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.1e-29 135.2 118 66.1
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 5.3e-24 116.3 206 47.1
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 5.0e-14 83.2 68 69.1
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 5.5e-13 79.7 177 42.4
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.1e-12 77.8 100 55.0
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 2.3e-11 74.3 199 32.7
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 2.6e-10 70.9 164 41.5
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 2.6e-10 70.9 76 60.5
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 2.2e-09 67.8 146 36.3
AagrBONN_evm.TU.Sc2ySwM_117.2428 Anthoceros agrestis HOM05D025386 ORTHO05D026614 1.2e-07 62.0 192 29.2
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 8.5e-06 55.8 66 56.1


User provided reference genes

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