Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 4.8e-166 587.8 306 100.0
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.5e-164 582.8 308 99.4
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 2.3e-131 472.6 300 82.7
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 3.8e-131 471.9 308 79.2
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 2.8e-129 465.7 305 79.3
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 4.1e-117 425.2 304 73.4
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 7.8e-116 421.0 282 78.7
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 4.4e-111 405.2 296 72.6
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 2.4e-109 399.4 252 79.8
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 4.1e-109 398.7 307 68.1
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 7.0e-109 397.9 274 73.0
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.2e-108 397.1 255 78.0
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 6.6e-107 391.3 304 66.4
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 1.1e-106 390.6 269 71.7
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 9.5e-106 387.5 271 71.2
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 1.6e-105 386.7 299 68.6
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 1.4e-104 383.6 311 65.6
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 2.3e-104 382.9 299 67.9
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 2.3e-104 382.9 299 65.9
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 3.1e-104 382.5 304 68.1
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 3.1e-104 382.5 284 70.8
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 5.2e-104 381.7 282 69.9
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 1.2e-103 380.6 305 68.5
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 2.6e-103 379.4 258 73.6
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 1.3e-102 377.1 271 69.4
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.3e-102 377.1 271 69.4
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 3.7e-102 375.6 354 60.5
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 6.4e-102 374.8 276 69.2
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 6.4e-102 374.8 299 65.2
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 8.3e-102 374.4 305 63.9
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 2.4e-101 372.9 258 72.5
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 2.4e-101 372.9 306 65.7
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 3.2e-101 372.5 263 69.2
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 3.2e-101 372.5 302 65.6
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 4.1e-101 372.1 267 70.0
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 1.6e-100 370.2 301 65.8
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 2.7e-100 369.4 295 66.4
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 2.7e-100 369.4 296 66.9
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 4.6e-100 368.6 292 67.1
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 4.6e-100 368.6 248 73.8
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 7.8e-100 367.9 241 75.5
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 7.8e-100 367.9 289 67.8
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 1.7e-99 366.7 308 63.6
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 2.3e-99 366.3 303 65.0
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 2.3e-99 366.3 310 63.2
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 3.0e-99 365.9 302 66.2
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 6.6e-99 364.8 264 70.1
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 6.6e-99 364.8 303 63.7
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 2.5e-98 362.8 303 63.4
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 1.6e-97 360.1 258 69.4
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 1.5e-95 353.6 297 65.0
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 3.4e-95 352.4 260 67.3
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 9.9e-95 350.9 268 69.4
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 2.9e-94 349.4 299 62.9
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 4.9e-94 348.6 308 61.0
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 8.4e-94 347.8 320 57.8
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 3.2e-93 345.9 265 65.7
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 5.4e-93 345.1 356 56.2
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 2.1e-92 343.2 258 67.1
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 6.0e-92 341.7 272 66.2
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 1.0e-91 340.9 245 69.8
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 1.0e-91 340.9 263 65.4
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.3e-91 340.5 267 63.3
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 2.3e-91 339.7 273 64.1
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 3.9e-91 339.0 300 60.7
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 4.3e-90 335.5 318 61.9
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 5.6e-90 335.1 262 66.0
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 1.2e-89 334.0 314 60.5
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 2.8e-89 332.8 241 71.4
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 2.0e-87 326.6 304 57.6
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 5.8e-87 325.1 289 62.3
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 9.9e-87 324.3 309 57.0
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 1.7e-86 323.6 259 61.4
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 1.4e-85 320.5 273 62.3
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 3.5e-84 315.8 309 55.3
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 3.5e-84 315.8 303 57.8
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 7.8e-84 314.7 274 58.8
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 7.8e-84 314.7 274 58.8
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 1.0e-83 314.3 309 55.7
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 3.9e-83 312.4 287 56.8
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 6.6e-83 311.6 273 59.0
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 1.1e-82 310.8 295 55.6
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 1.1e-82 310.8 295 55.6
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 4.3e-82 308.9 274 58.4
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.5e-79 300.4 306 55.2
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 4.9e-78 295.4 304 55.9
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 4.2e-77 292.4 304 55.6
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.6e-73 280.4 300 54.0
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 6.2e-73 278.5 199 68.8
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 2.9e-70 269.6 208 64.4
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 3.2e-69 266.2 266 52.6
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 3.2e-69 266.2 214 64.0
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 3.5e-68 262.7 170 78.2
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 1.5e-66 257.3 233 57.9
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 4.8e-65 252.3 303 49.2
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 3.8e-62 242.7 209 65.1
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 5.7e-58 228.8 190 59.5
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 4.1e-56 222.6 158 67.7
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 1.9e-53 213.8 209 55.0
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 1.0e-51 208.0 242 45.9
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.5e-50 204.1 167 64.1
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.8e-40 170.6 136 61.0
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 7.7e-39 165.2 186 54.3
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.6e-34 150.2 146 53.4
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.8e-22 109.8 192 35.9
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 4.2e-21 106.3 244 32.8
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.4e-16 91.3 102 47.1
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 2.4e-16 90.5 283 30.4
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 4.7e-12 76.3 56 64.3
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 5.2e-11 72.8 56 60.7
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 4.4e-10 69.7 203 27.1
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 3.7e-09 66.6 258 26.7
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 8.3e-09 65.5 268 26.5
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 8.3e-09 65.5 245 24.9
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 1.4e-08 64.7 267 23.6
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 1.4e-08 64.7 249 25.3
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 1.4e-08 64.7 255 25.5
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 1.4e-08 64.7 245 25.7
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 1.4e-08 64.7 245 25.7
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 1.8e-08 64.3 257 25.7
HanXRQChr01g0023951 Helianthus annuus HOM05D006655 ORTHO05D007986 3.2e-08 63.5 255 24.3
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 4.1e-08 63.2 277 23.5
MSTRG.18452 Avicennia marina HOM05D006655 ORTHO05D007986 5.4e-08 62.8 260 25.8
FAN16G3233 Fragaria x ananassa HOM05D006655 ORTHO05D007986 5.4e-08 62.8 245 25.3
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 7.0e-08 62.4 249 24.5
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 7.0e-08 62.4 249 24.5
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 9.2e-08 62.0 274 24.8
FAN21G0719 Fragaria x ananassa HOM05D006655 ORTHO05D007986 9.2e-08 62.0 245 25.3
AL7G20510 Arabidopsis lyrata HOM05D006655 ORTHO05D007986 1.2e-07 61.6 249 24.5
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 1.2e-07 61.6 245 24.1
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.2e-07 61.6 249 25.3
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 1.6e-07 61.2 249 24.9
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.6e-07 61.2 249 24.9
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.0e-07 60.8 54 44.4
unitig_90.g27460 Utricularia gibba HOM05D006655 ORTHO05D007986 2.0e-07 60.8 233 24.5
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 2.0e-07 60.8 243 25.1
MBI13_g19379_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 2.7e-07 60.5 267 26.2
VMungo0331G0819 Vigna mungo HOM05D006655 ORTHO05D007986 2.7e-07 60.5 245 24.1
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 3.5e-07 60.1 270 24.1
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 3.5e-07 60.1 257 25.3
Glyma.16G082200 Glycine max HOM05D006655 ORTHO05D007986 3.5e-07 60.1 266 23.7
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 4.6e-07 59.7 249 24.5
Dinv36200 Davidia involucrata HOM05D006655 ORTHO05D007986 4.6e-07 59.7 270 24.8
Phvul.010G032900 Phaseolus vulgaris HOM05D006655 ORTHO05D007986 4.6e-07 59.7 247 23.9
SGA_v2.0_scaffold8G04557 Striga asiatica HOM05D006655 ORTHO05D007986 4.6e-07 59.7 246 25.2
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 5.9e-07 59.3 243 23.5
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 5.9e-07 59.3 262 24.4
Rhsim13G0216500 Rhododendron simsii HOM05D006655 ORTHO05D007986 5.9e-07 59.3 267 24.7
Sabra16G0154600 Salix brachista HOM05D006655 ORTHO05D007986 5.9e-07 59.3 258 23.3
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 7.8e-07 58.9 279 22.2
Gohir.D09G107900 Gossypium hirsutum HOM05D006655 ORTHO05D007986 7.8e-07 58.9 243 23.5
Gorai.006G125600 Gossypium raimondii HOM05D006655 ORTHO05D007986 7.8e-07 58.9 243 23.5
PGR102G2275 Punica granatum HOM05D006655 ORTHO05D007986 7.8e-07 58.9 245 25.3
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 7.8e-07 58.9 268 24.3
Lj3g0004618 Lotus japonicus HOM05D006655 ORTHO05D007986 1.0e-06 58.5 248 22.6
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 1.3e-06 58.2 273 23.8
Haze_23196 Corylus avellana HOM05D006655 ORTHO05D007986 1.3e-06 58.2 279 22.6
QL01p017764 Quercus lobata HOM05D006655 ORTHO05D007986 1.3e-06 58.2 260 23.1
Solyc01g008920.4 Solanum lycopersicum HOM05D006655 ORTHO05D007986 1.3e-06 58.2 246 24.0
Sopen01g004410 Solanum pennellii HOM05D006655 ORTHO05D007986 1.3e-06 58.2 246 24.0
BolC7t46320H Brassica oleracea HOM05D006655 ORTHO05D007986 1.7e-06 57.8 237 24.5
Sp7g29360 Schrenkiella parvula HOM05D006655 ORTHO05D007986 1.7e-06 57.8 249 23.7
Aa31LG2G18820 Aethionema arabicum HOM05D006655 ORTHO05D007986 2.3e-06 57.4 263 23.6
MELO3C015152.2 Cucumis melo HOM05D006655 ORTHO05D007986 2.3e-06 57.4 270 23.3
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 2.3e-06 57.4 231 24.2
CsaV3_1G043150 Cucumis sativus L. HOM05D006655 ORTHO05D007986 3.9e-06 56.6 243 23.5
THA.LOC104816930 Tarenaya hassleriana HOM05D006655 ORTHO05D007986 3.9e-06 56.6 273 24.5
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 5.0e-06 56.2 134 29.1


User provided reference genes

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