Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018585 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 3.4e-80 301.6 150 100.0
Actinidia35343 Actinidia chinensis HOM05D002166 ORTHO05D002634 1.9e-27 126.3 145 53.8
CSS0020014 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 4.3e-27 125.2 146 55.5
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 5.6e-27 124.8 146 54.1
vmacro11726 Vaccinium macrocarpon HOM05D002166 ORTHO05D002634 4.8e-26 121.7 142 57.7
Actinidia36941 Actinidia chinensis HOM05D002166 ORTHO05D002634 3.1e-25 119.0 144 56.9
ECA246G2514 Erigeron canadensis HOM05D002166 ORTHO05D002634 1.9e-22 109.8 153 51.0
CANSAT11G1162 Cannabis sativa HOM05D002166 ORTHO05D002634 3.5e-21 105.5 149 45.0
Rhsim06G0216800 Rhododendron simsii HOM05D002166 ORTHO05D002634 3.5e-21 105.5 150 49.3
Lsat_1_v5_gn_5_4021 Lactuca sativa HOM05D002166 ORTHO05D002634 6.0e-21 104.8 153 49.7
HanXRQChr08g0233861 Helianthus annuus HOM05D002166 ORTHO05D002634 1.8e-20 103.2 152 50.0
Lj8A169T85 Lonicera japonica HOM05D002166 ORTHO05D002634 1.8e-20 103.2 142 45.8
Actinidia10734 Actinidia chinensis HOM05D002166 ORTHO05D002634 3.9e-20 102.1 145 47.6
Cc05_g13700 Coffea canephora HOM05D002166 ORTHO05D002634 2.2e-18 96.3 145 46.9
GSVIVG01037646001 Vitis vinifera HOM05D002166 ORTHO05D002634 4.8e-18 95.1 151 46.4
HanXRQChr05g0159381 Helianthus annuus HOM05D002166 ORTHO05D002634 2.4e-17 92.8 155 47.1
MBI02_g07160_MAGBIO Magnolia biondii HOM05D002166 ORTHO05D002634 2.4e-17 92.8 147 45.6
Nn1g03540 Nelumbo nucifera HOM05D002166 ORTHO05D002634 3.1e-17 92.4 121 48.8
MSTRG.15149 Avicennia marina HOM05D002166 ORTHO05D002634 4.1e-17 92.0 119 47.9
Hma1.2p1_2464F.1_g322600 Hydrangea macrophylla HOM05D002166 ORTHO05D002634 4.5e-16 88.6 142 45.1
Hma1.2p1_3160F.1_g333440 Hydrangea macrophylla HOM05D002166 ORTHO05D002634 4.5e-16 88.6 142 45.1
Nitab4.5_0001913g0130 Nicotiana tabacum HOM05D002166 ORTHO05D002634 4.5e-16 88.6 125 51.2
Nitab4.5_0011129g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 1.7e-15 86.7 125 51.2
TAR624G1431 Trochodendron aralioides HOM05D002166 ORTHO05D002634 1.7e-15 86.7 162 42.6
Sopen07g032770 Solanum pennellii HOM05D002166 ORTHO05D002634 2.9e-15 85.9 125 47.2
Solyc07g064580.3 Solanum lycopersicum HOM05D002166 ORTHO05D002634 8.5e-15 84.3 125 46.4
vmacro09716 Vaccinium macrocarpon HOM05D002166 ORTHO05D002634 8.5e-15 84.3 145 46.9
PGSC0003DMG400022320 Solanum tuberosum HOM05D002166 ORTHO05D002634 1.9e-14 83.2 122 46.7
Actinidia05096 Actinidia chinensis HOM05D002166 ORTHO05D002634 2.5e-14 82.8 115 49.6
Manes.03G129200 Manihot esculenta HOM05D002166 ORTHO05D002634 2.1e-13 79.7 148 42.6
Cfa020346 Carpinus fangiana HOM05D002166 ORTHO05D002634 3.6e-13 79.0 140 45.0
Aqoxy1G02169 Aquilegia oxysepala HOM05D002166 ORTHO05D002634 6.1e-13 78.2 124 41.1
RhsimUnG0250700 Rhododendron simsii HOM05D002166 ORTHO05D002634 1.0e-12 77.4 126 50.8
Migut.H01828 Erythranthe guttata HOM05D002166 ORTHO05D002634 1.4e-12 77.0 99 47.5
Manes.15G072000 Manihot esculenta HOM05D002166 ORTHO05D002634 3.9e-12 75.5 131 42.7
Oeu042937.1 Olea europaea HOM05D002166 ORTHO05D002634 6.7e-12 74.7 130 43.1
THA.LOC104817854 Tarenaya hassleriana HOM05D002166 ORTHO05D002634 1.9e-11 73.2 160 39.4
CiPaw.11G189200 Carya illinoinensis HOM05D002166 ORTHO05D002634 4.3e-11 72.0 136 44.9
LjContig00272g0027317 Lotus japonicus HOM05D002166 ORTHO05D002634 4.3e-11 72.0 139 43.2
DCAR_022561 Daucus carota HOM05D002166 ORTHO05D002634 9.7e-11 70.9 116 44.8
SGA_v2.0_scaffold18G08536 Striga asiatica HOM05D002166 ORTHO05D002634 9.7e-11 70.9 134 41.0
VMungo0647G1741 Vigna mungo HOM05D002166 ORTHO05D002634 9.7e-11 70.9 127 44.9
MD11G1218700 Malus domestica HOM05D002166 ORTHO05D002634 1.3e-10 70.5 134 42.5
Cpa.g.sc97.2 Carica papaya HOM05D002166 ORTHO05D002634 1.7e-10 70.1 155 38.1
Gohir.D05G369400 Gossypium hirsutum HOM05D002166 ORTHO05D002634 1.7e-10 70.1 144 39.6
FAN21G3541 Fragaria x ananassa HOM05D002166 ORTHO05D002634 2.2e-10 69.7 131 43.5
CsaV3_3G005040 Cucumis sativus L. HOM05D002166 ORTHO05D002634 2.8e-10 69.3 129 45.0
TAR626G1818 Trochodendron aralioides HOM05D002166 ORTHO05D002634 2.8e-10 69.3 109 45.9
AL1G58330 Arabidopsis lyrata HOM05D002166 ORTHO05D002634 4.8e-10 68.6 160 36.2
Gohir.A04G016800 Gossypium hirsutum HOM05D002166 ORTHO05D002634 4.8e-10 68.6 145 39.3
MELO3C025366.2 Cucumis melo HOM05D002166 ORTHO05D002634 8.2e-10 67.8 128 43.0
FAN11G2830 Fragaria x ananassa HOM05D002166 ORTHO05D002634 8.2e-10 67.8 143 40.6
Gorai.009G438100 Gossypium raimondii HOM05D002166 ORTHO05D002634 1.1e-09 67.4 144 38.9
Aa31LG10G3670 Aethionema arabicum HOM05D002166 ORTHO05D002634 1.4e-09 67.0 151 39.7
AT1G50660 Arabidopsis thaliana HOM05D002166 ORTHO05D002634 1.4e-09 67.0 152 36.8
Glyma.02G290700 Glycine max HOM05D002166 ORTHO05D002634 1.4e-09 67.0 131 43.5
Peaxi162Scf00964g00022 Petunia axillaris HOM05D002166 ORTHO05D002634 1.4e-09 67.0 102 44.1
Prupe.4G212500 Prunus persica HOM05D002166 ORTHO05D002634 1.4e-09 67.0 149 38.3
TWI38G2284 Tripterygium wilfordii HOM05D002166 ORTHO05D002634 1.4e-09 67.0 145 37.2
arahy.Tifrunner.gnm1.ann1.2WUV3V Arachis hypogaea HOM05D002166 ORTHO05D002634 1.8e-09 66.6 128 45.3
CARHR040710 Cardamine hirsuta HOM05D002166 ORTHO05D002634 1.8e-09 66.6 161 37.9
Duzib268G1828 Durio zibethinus HOM05D002166 ORTHO05D002634 1.8e-09 66.6 146 39.0
Thhalv10011268m.g Eutrema salsugineum HOM05D002166 ORTHO05D002634 2.4e-09 66.2 153 37.3
FAN25G0402 Fragaria x ananassa HOM05D002166 ORTHO05D002634 3.1e-09 65.9 137 40.9
arahy.Tifrunner.gnm1.ann1.MVDX5J Arachis hypogaea HOM05D002166 ORTHO05D002634 4.1e-09 65.5 128 44.5
QL08p010329 Quercus lobata HOM05D002166 ORTHO05D002634 4.1e-09 65.5 152 38.8
MD03G1201300 Malus domestica HOM05D002166 ORTHO05D002634 6.9e-09 64.7 141 41.8
Sed0016610 Sechium edule HOM05D002166 ORTHO05D002634 6.9e-09 64.7 133 39.1
TWI38G0482 Tripterygium wilfordii HOM05D002166 ORTHO05D002634 9.1e-09 64.3 132 37.1
MSTRG.14434 Avicennia marina HOM05D002166 ORTHO05D002634 1.2e-08 63.9 102 45.1
CiPaw.12G129600 Carya illinoinensis HOM05D002166 ORTHO05D002634 1.2e-08 63.9 150 38.7
VMungo0540G1154 Vigna mungo HOM05D002166 ORTHO05D002634 1.2e-08 63.9 144 42.4
Phvul.008G267200 Phaseolus vulgaris HOM05D002166 ORTHO05D002634 1.5e-08 63.5 128 43.8
Ca_06318_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 2.6e-08 62.8 143 38.5
Ca_30807_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 2.6e-08 62.8 143 38.5
ClCG10G005330 Citrullus lanatus HOM05D002166 ORTHO05D002634 4.5e-08 62.0 131 40.5
Glyma.18G097100 Glycine max HOM05D002166 ORTHO05D002634 5.9e-08 61.6 149 37.6
Phvul.006G042900 Phaseolus vulgaris HOM05D002166 ORTHO05D002634 5.9e-08 61.6 145 40.7
Thecc.07G037300 Theobroma cacao HOM05D002166 ORTHO05D002634 5.9e-08 61.6 151 38.4
Sp1g37510 Schrenkiella parvula HOM05D002166 ORTHO05D002634 7.7e-08 61.2 156 35.3
Glyma.14G024000 Glycine max HOM05D002166 ORTHO05D002634 1.0e-07 60.8 129 38.0
BcaB07g33506 Brassica carinata HOM05D002166 ORTHO05D002634 1.3e-07 60.5 153 35.3
Eucgr.F00765 Eucalyptus grandis HOM05D002166 ORTHO05D002634 1.3e-07 60.5 161 38.5
EL10Ac4g07812 Beta vulgaris HOM05D002166 ORTHO05D002634 1.7e-07 60.1 157 35.0
FAN16G1047 Fragaria x ananassa HOM05D002166 ORTHO05D002634 1.7e-07 60.1 140 38.6
Gohir.D11G289500 Gossypium hirsutum HOM05D002166 ORTHO05D002634 1.7e-07 60.1 133 39.8
Gorai.007G313300 Gossypium raimondii HOM05D002166 ORTHO05D002634 1.7e-07 60.1 133 39.8
Lj6g0008473 Lotus japonicus HOM05D002166 ORTHO05D002634 1.7e-07 60.1 121 43.8
Carub.0001s3970 Capsella rubella HOM05D002166 ORTHO05D002634 2.2e-07 59.7 166 33.7
CDE02G2372 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 2.2e-07 59.7 153 37.9
BolC6t35705H Brassica oleracea HOM05D002166 ORTHO05D002634 2.9e-07 59.3 152 34.9
MBI02_g24810_MAGBIO Magnolia biondii HOM05D002166 ORTHO05D002634 3.8e-07 58.9 126 38.9
ClCG09G010790 Citrullus lanatus HOM05D002166 ORTHO05D002634 6.5e-07 58.2 129 35.7
Sed0003386 Sechium edule HOM05D002166 ORTHO05D002634 6.5e-07 58.2 155 32.9
unitig_26.g9956 Utricularia gibba HOM05D002166 ORTHO05D002634 6.5e-07 58.2 97 39.2
Gohir.A11G278700 Gossypium hirsutum HOM05D002166 ORTHO05D002634 8.5e-07 57.8 85 44.7
Gorai.002G088400 Gossypium raimondii HOM05D002166 ORTHO05D002634 8.5e-07 57.8 154 37.0
CsaV3_7G021790 Cucumis sativus L. HOM05D002166 ORTHO05D002634 1.1e-06 57.4 110 36.4
Gohir.A01G079400 Gossypium hirsutum HOM05D002166 ORTHO05D002634 1.1e-06 57.4 154 36.4
PGR083G0038 Punica granatum HOM05D002166 ORTHO05D002634 1.1e-06 57.4 151 35.1
HPP92_014125 Vanilla planifolia HOM05D002166 ORTHO05D002634 1.1e-06 57.4 93 38.7
A06p02960 Brassica napus HOM05D002166 ORTHO05D002634 1.4e-06 57.0 153 34.6
BraA06t23502Z Brassica rapa HOM05D002166 ORTHO05D002634 1.4e-06 57.0 153 34.6
COL.COLO4_09660 Corchorus olitorius HOM05D002166 ORTHO05D002634 1.9e-06 56.6 154 35.7
Duzib213G0813 Durio zibethinus HOM05D002166 ORTHO05D002634 1.9e-06 56.6 146 34.2
BcaC08g43244 Brassica carinata HOM05D002166 ORTHO05D002634 2.5e-06 56.2 152 34.2
Nitab4.5_0006428g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 2.5e-06 56.2 106 39.6
CDE12G0015 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 3.2e-06 55.8 138 39.1
Psat2g011000 Pisum sativum HOM05D002166 ORTHO05D002634 3.2e-06 55.8 138 37.0
TPR.G1145 Trifolium pratense HOM05D002166 ORTHO05D002634 3.2e-06 55.8 117 41.0
Ah.06g186120 Amaranthus hybridus HOM05D002449 ORTHO05D003136 4.2e-06 55.5 154 34.4
Medtr3g051430 Medicago truncatula HOM05D002166 ORTHO05D002634 4.2e-06 55.5 149 36.9
Psat5g180240 Pisum sativum HOM05D002166 ORTHO05D002634 4.2e-06 55.5 142 38.7
RcHm_v2.0_Chr5g0039421 Rosa chinensis HOM05D002166 ORTHO05D002634 4.2e-06 55.5 140 32.9
arahy.Tifrunner.gnm1.ann1.WSU996 Arachis hypogaea HOM05D002166 ORTHO05D002634 5.5e-06 55.1 152 36.2
AUR62020445 Chenopodium quinoa HOM05D002166 ORTHO05D002634 5.5e-06 55.1 161 34.8
Gohir.A13G138300 Gossypium hirsutum HOM05D002166 ORTHO05D002634 5.5e-06 55.1 129 36.4
Gohir.D01G066400 Gossypium hirsutum HOM05D002166 ORTHO05D002634 5.5e-06 55.1 154 36.4
Nitab4.5_0000981g0080 Nicotiana tabacum HOM05D002166 ORTHO05D002634 5.5e-06 55.1 99 40.4
PSO675G8999 Papaver somniferum HOM05D002166 ORTHO05D002634 5.5e-06 55.1 146 34.9
CARHR096000 Cardamine hirsuta HOM05D002166 ORTHO05D002634 7.2e-06 54.7 146 32.9
Gohir.D13G143100 Gossypium hirsutum HOM05D002166 ORTHO05D002634 7.2e-06 54.7 141 34.8
Gorai.013G160000 Gossypium raimondii HOM05D002166 ORTHO05D002634 7.2e-06 54.7 141 36.2
C06p05920 Brassica napus HOM05D002166 ORTHO05D002634 9.4e-06 54.3 148 34.5
Potri.011G090100 Populus trichocarpa HOM05D002166 ORTHO05D002634 9.4e-06 54.3 116 34.5
PGSC0003DMG400027878 Solanum tuberosum HOM05D002166 ORTHO05D002634 9.4e-06 54.3 151 36.4


User provided reference genes

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