Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 5.7e-133 477.6 247 100.0
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 1.6e-82 310.1 223 69.5
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 2.7e-82 309.3 247 64.4
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 4.7e-79 298.5 242 64.0
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 2.9e-76 289.3 247 60.3
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 9.5e-72 274.2 240 57.9
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 1.0e-70 270.8 244 56.1
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 1.8e-70 270.0 266 55.6
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 3.1e-70 269.2 266 54.9
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 2.0e-66 256.5 256 51.2
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 4.6e-66 255.4 220 55.9
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 4.3e-64 248.8 259 49.8
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 4.7e-63 245.4 272 50.7
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 8.9e-62 241.1 257 49.8
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 7.5e-61 238.0 260 47.7
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 1.3e-60 237.3 246 51.2
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 2.2e-60 236.5 257 50.6
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 1.1e-59 234.2 242 51.2
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.4e-59 233.8 270 46.7
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 9.2e-59 231.1 246 48.8
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 9.2e-59 231.1 254 50.8
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 1.2e-58 230.7 265 47.5
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 6.0e-58 228.4 241 49.4
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 7.8e-58 228.0 270 46.3
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 3.9e-57 225.7 252 48.8
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 1.1e-56 224.2 246 49.2
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 7.3e-56 221.5 241 48.5
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 3.6e-55 219.2 254 46.1
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 8.1e-55 218.0 270 45.2
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 8.1e-55 218.0 270 45.2
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 8.1e-55 218.0 238 47.9
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 2.3e-54 216.5 242 48.8
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 5.2e-54 215.3 257 45.5
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 8.9e-54 214.5 268 46.6
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 1.5e-53 213.8 255 46.3
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 2.0e-53 213.4 242 49.6
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 9.9e-53 211.1 163 60.1
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 3.7e-52 209.1 271 45.0
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 1.1e-51 207.6 231 51.1
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 1.4e-51 207.2 255 43.9
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 2.1e-50 203.4 254 43.3
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 3.5e-50 202.6 282 41.8
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 1.0e-49 201.1 223 49.8
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 1.7e-49 200.3 224 45.1
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 3.9e-49 199.1 239 44.8
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 2.5e-48 196.4 240 43.3
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 5.6e-48 195.3 242 46.7
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 9.6e-48 194.5 262 42.4
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 3.6e-47 192.6 260 44.6
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 8.1e-47 191.4 238 45.0
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.8e-46 190.3 235 43.8
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 2.4e-46 189.9 244 43.4
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 4.0e-46 189.1 244 43.0
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 5.2e-46 188.7 244 43.0
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 4.4e-45 185.7 233 44.2
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 6.4e-44 181.8 207 44.4
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 1.9e-43 180.3 253 44.7
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 1.3e-41 174.1 258 42.6
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 1.3e-41 174.1 249 40.6
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 8.7e-41 171.4 211 44.1
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 2.5e-40 169.9 255 38.8
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 3.3e-40 169.5 168 51.2
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 7.3e-40 168.3 223 42.6
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 1.6e-39 167.2 157 54.1
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 2.8e-39 166.4 204 45.6
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 4.0e-38 162.5 247 39.3
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 7.6e-37 158.3 265 40.8
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 3.8e-36 156.0 168 48.2
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 7.1e-35 151.8 267 37.8
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 1.2e-34 151.0 248 37.5
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 1.6e-34 150.6 229 38.4
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 7.9e-34 148.3 156 48.7
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 7.9e-34 148.3 239 39.7
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.9e-33 146.0 246 35.8
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 8.7e-33 144.8 239 38.1
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 1.9e-32 143.7 236 36.4
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.6e-31 140.6 187 42.8
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 3.6e-31 139.4 167 41.3
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 8.1e-31 138.3 245 37.1
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 2.4e-30 136.7 246 35.8
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 3.5e-26 122.9 123 49.6
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.3e-25 120.9 150 43.3
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 7.4e-24 115.2 169 40.8
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 1.1e-22 111.3 267 32.2
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 6.9e-22 108.6 254 30.3
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 7.6e-21 105.1 248 31.5
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 1.3e-20 104.4 185 36.8
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 1.4e-19 100.9 184 36.4
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 1.4e-19 100.9 103 50.5
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 6.0e-18 95.5 244 31.6
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 6.0e-18 95.5 188 35.6
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 1.3e-17 94.4 214 30.8
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 5.1e-17 92.4 269 30.5
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 6.7e-17 92.0 159 37.1
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 1.1e-16 91.3 255 31.0
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 2.5e-16 90.1 258 29.8
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 2.4e-14 83.6 226 28.8
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 3.1e-14 83.2 226 28.8
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 3.1e-14 83.2 226 28.8
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 5.3e-14 82.4 234 27.4
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 6.9e-14 82.0 244 28.7
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 1.5e-13 80.9 262 28.6
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 1.0e-12 78.2 218 29.4
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 1.0e-12 78.2 218 29.4
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 3.8e-12 76.3 133 31.6
DCAR_030642 Daucus carota HOM05D007633 ORTHO05D008817 5.0e-12 75.9 114 43.0
Lalb_Chr01g0013111 Lupinus albus HOM05D007633 ORTHO05D008817 2.1e-10 70.5 69 52.2
Os10g0430800 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 3.5e-10 69.7 247 27.5
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 4.6e-10 69.3 53 60.4
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 3.9e-09 66.2 51 56.9
TWI73G0180 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.2e-07 60.5 99 38.4
Os10g0430700 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 3.7e-07 59.7 183 29.0
MD13G1194700 Malus domestica HOM05D007633 ORTHO05D008817 4.8e-07 59.3 68 45.6
MD13G1194800 Malus domestica HOM05D007633 ORTHO05D008817 1.4e-06 57.8 50 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1122 Anthoceros agrestis HOM05D020856 ORTHO05D018339 1.8e-06 57.4 123 29.3
Sabra08G0117600 Salix brachista HOM05D007633 ORTHO05D008817 6.9e-06 55.5 90 34.4


User provided reference genes

Program Settings