Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.0e-45 184.5 100 100.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-41 172.9 100 97.0
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.0e-40 168.3 100 94.0
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.1e-18 96.7 86 62.8
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 5.4e-18 94.4 73 67.1
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.3e-18 93.6 96 60.4
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.2e-17 93.2 86 60.5
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.6e-17 92.8 75 66.7
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.1e-17 92.4 75 68.0
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.7e-17 92.0 71 67.6
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.7e-17 92.0 74 70.3
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 3.5e-17 91.7 95 58.9
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.0e-17 90.9 91 59.3
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 7.9e-17 90.5 75 68.0
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.0e-16 90.1 76 64.5
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.8e-16 89.4 93 59.1
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 3.0e-16 88.6 87 60.9
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.7e-16 87.4 95 55.8
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 8.7e-16 87.0 75 65.3
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 8.7e-16 87.0 75 65.3
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 8.7e-16 87.0 77 66.2
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.1e-15 86.7 96 54.2
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.1e-15 86.7 96 54.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.1e-15 86.7 77 66.2
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.1e-15 86.7 71 71.8
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.1e-15 86.7 94 59.6
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.5e-15 86.3 71 71.8
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.9e-15 85.9 75 65.3
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.5e-15 85.5 89 56.2
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.3e-15 85.1 71 69.0
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 3.3e-15 85.1 78 60.3
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 7.4e-15 84.0 83 57.8
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 7.4e-15 84.0 89 55.1
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 7.4e-15 84.0 71 67.6
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 9.6e-15 83.6 83 61.4
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 9.6e-15 83.6 78 59.0
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 9.6e-15 83.6 76 60.5
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 9.6e-15 83.6 95 57.9
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 9.6e-15 83.6 72 66.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.6e-14 82.8 71 66.2
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.1e-14 82.4 78 62.8
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.1e-14 82.4 83 63.9
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.1e-14 82.4 81 56.8
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.8e-14 82.0 86 58.1
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.8e-14 82.0 70 65.7
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 3.7e-14 81.6 77 61.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 3.7e-14 81.6 67 62.7
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.7e-14 81.6 70 62.9
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.7e-14 81.6 78 62.8
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 3.7e-14 81.6 70 61.4
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 3.7e-14 81.6 71 66.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 3.7e-14 81.6 100 55.0
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.8e-14 81.3 71 63.4
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 4.8e-14 81.3 82 61.0
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 6.2e-14 80.9 64 71.9
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 6.2e-14 80.9 71 63.4
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 6.2e-14 80.9 71 62.0
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 6.2e-14 80.9 97 56.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 6.2e-14 80.9 94 54.3
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 8.1e-14 80.5 94 58.5
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.1e-14 80.5 70 64.3
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 8.1e-14 80.5 77 62.3
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.1e-13 80.1 87 57.5
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.1e-13 80.1 87 57.5
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.1e-13 80.1 64 70.3
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.1e-13 80.1 67 68.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.1e-13 80.1 94 59.6
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.1e-13 80.1 64 71.9
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.1e-13 80.1 81 59.3
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.4e-13 79.7 76 57.9
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.4e-13 79.7 72 63.9
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.4e-13 79.7 72 63.9
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.4e-13 79.7 72 63.9
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.4e-13 79.7 72 63.9
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.4e-13 79.7 72 63.9
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.4e-13 79.7 64 70.3
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.4e-13 79.7 64 70.3
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.8e-13 79.3 88 55.7
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.4e-13 79.0 95 51.6
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 2.4e-13 79.0 89 55.1
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.1e-13 78.6 78 55.1
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.1e-13 78.6 90 54.4
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 3.1e-13 78.6 75 61.3
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.1e-13 78.6 71 64.8
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 4.0e-13 78.2 75 60.0
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 5.3e-13 77.8 74 59.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 5.3e-13 77.8 89 49.4
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.3e-13 77.8 95 54.7
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 6.9e-13 77.4 75 64.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.0e-13 77.0 71 60.6
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 9.0e-13 77.0 82 59.8
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.2e-12 76.6 84 59.5
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.5e-12 76.3 82 56.1
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.5e-12 76.3 90 51.1
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 2.0e-12 75.9 71 62.0
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.6e-12 75.5 72 59.7
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.6e-12 75.5 72 59.7
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.6e-12 75.5 72 59.7
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 2.6e-12 75.5 72 62.5
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 3.4e-12 75.1 83 57.8
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 4.5e-12 74.7 84 56.0
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.5e-12 74.7 60 71.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 7.6e-12 73.9 66 62.1
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.3e-11 73.2 66 65.2
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.7e-11 72.8 69 59.4
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.7e-11 72.8 74 58.1
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.7e-11 72.8 80 55.0
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.2e-11 72.4 70 65.7
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.9e-11 72.0 72 56.9
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 4.9e-11 71.2 72 55.6
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 4.9e-11 71.2 91 51.6
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 4.9e-11 71.2 78 57.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 6.5e-11 70.9 61 67.2
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 6.5e-11 70.9 71 54.9
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 6.5e-11 70.9 80 53.8
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 6.5e-11 70.9 80 53.8
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.5e-11 70.9 93 53.8
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-10 70.1 65 63.1
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 1.1e-10 70.1 78 53.8
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.1e-10 70.1 85 54.1
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.1e-10 70.1 85 54.1
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-10 69.7 66 57.6
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.4e-10 69.7 66 62.1
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.9e-10 69.3 94 48.9
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.9e-10 69.3 70 52.9
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.9e-10 69.3 69 55.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 3.2e-10 68.6 67 55.2
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 4.2e-10 68.2 70 55.7
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 5.5e-10 67.8 77 61.0
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.6e-09 66.2 74 52.7
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 2.1e-09 65.9 69 55.1
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.7e-09 65.5 89 48.3
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 2.7e-09 65.5 72 52.8
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 3.5e-09 65.1 55 60.0
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 4.6e-09 64.7 90 44.4
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 4.6e-09 64.7 82 50.0
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 7.9e-09 63.9 72 55.6
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 7.9e-09 63.9 66 51.5
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 1.0e-08 63.5 73 56.2
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.8e-08 62.8 63 58.7
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 5.1e-08 61.2 72 52.8
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 6.7e-08 60.8 67 49.3
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 8.7e-08 60.5 71 53.5
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 8.7e-08 60.5 75 48.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.1e-07 60.1 64 54.7
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.1e-07 60.1 80 46.2
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.9e-07 59.3 101 41.6
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.3e-06 56.6 84 41.7
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.3e-06 56.6 85 44.7
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 2.1e-06 55.8 66 51.5
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 8.2e-06 53.9 60 58.3


User provided reference genes

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