Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 0.0e+00 1177.5 592 100.0
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 3.8e-300 1034.2 592 87.7
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 1.2e-285 986.1 631 80.3
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 2.4e-275 951.8 593 80.9
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 2.1e-274 948.7 594 80.3
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 2.3e-273 945.3 595 80.3
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 5.6e-272 940.6 593 79.8
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 1.3e-271 939.5 594 79.6
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 1.6e-271 939.1 593 80.1
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 2.1e-271 938.7 593 79.4
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 3.1e-270 934.9 595 78.2
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 9.0e-270 933.3 595 78.0
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 1.3e-268 929.5 593 79.1
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 4.9e-268 927.5 594 79.5
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.1e-267 926.4 594 79.3
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.6e-266 922.5 594 77.9
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.3e-265 919.5 594 77.8
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 3.0e-265 918.3 591 78.3
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 6.7e-265 917.1 594 77.3
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.9e-264 915.6 595 77.5
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.3e-263 912.9 597 77.6
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 1.3e-263 912.9 578 78.5
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 8.2e-263 910.2 591 77.8
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.4e-262 909.4 608 75.0
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 2.4e-262 908.7 584 78.8
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 5.3e-262 907.5 597 75.7
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 9.0e-262 906.7 584 77.2
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 2.6e-261 905.2 595 77.8
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 7.6e-261 903.7 592 77.0
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.0e-260 903.3 546 81.7
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 6.5e-260 900.6 594 76.1
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 1.9e-259 899.0 592 76.7
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 2.1e-258 895.6 595 75.6
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 6.1e-258 894.0 591 75.1
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 2.3e-257 892.1 597 73.9
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 2.3e-257 892.1 593 75.0
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 5.1e-257 891.0 594 76.3
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 6.7e-257 890.6 576 78.1
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 6.7e-257 890.6 592 77.0
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 5.7e-256 887.5 592 74.7
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 2.2e-255 885.6 597 75.0
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 3.7e-255 884.8 591 76.5
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 6.3e-255 884.0 581 77.1
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 8.2e-255 883.6 591 74.8
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 8.2e-255 883.6 594 75.8
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 8.2e-255 883.6 600 74.5
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 3.1e-254 881.7 597 74.0
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 2.0e-253 879.0 597 75.2
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 3.8e-252 874.8 568 76.6
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 6.5e-252 874.0 595 75.0
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 3.2e-251 871.7 591 74.6
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 4.2e-251 871.3 593 74.7
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 1.6e-250 869.4 602 73.9
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 2.1e-250 869.0 598 73.6
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 4.7e-250 867.8 593 74.5
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 6.1e-250 867.5 595 74.3
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 7.9e-250 867.1 598 73.4
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 2.3e-249 865.5 596 73.8
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 3.0e-249 865.1 603 73.3
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 3.0e-249 865.1 600 73.7
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 8.8e-249 863.6 576 75.9
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.5e-248 862.8 595 74.1
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 1.5e-248 862.8 618 72.0
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 2.6e-248 862.1 591 72.4
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 4.8e-247 857.8 593 72.8
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.8e-247 857.8 600 73.3
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 6.3e-247 857.4 594 73.1
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 8.2e-247 857.1 604 72.0
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.8e-246 855.9 598 73.6
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 2.4e-246 855.5 594 72.4
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 2.4e-246 855.5 567 75.7
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 7.0e-246 854.0 600 73.3
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 3.4e-245 851.7 598 72.1
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 4.5e-245 851.3 598 72.2
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 1.0e-244 850.1 597 72.2
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 1.0e-244 850.1 597 72.2
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 6.5e-244 847.4 629 70.1
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 3.6e-242 841.6 591 73.6
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.3e-239 833.2 585 72.3
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.4e-238 829.7 592 73.1
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 2.2e-236 822.4 519 79.6
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 6.5e-236 820.8 547 73.7
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.1e-235 820.1 587 71.9
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 1.5e-235 819.7 592 71.5
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 8.8e-233 810.4 595 71.3
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 8.8e-233 810.4 633 68.2
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 2.0e-232 809.3 590 69.7
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.1e-230 803.5 591 71.2
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 1.3e-228 796.6 561 72.2
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 7.2e-227 790.8 521 77.4
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 1.0e-225 786.9 548 72.6
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 1.5e-224 783.1 523 74.0
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 7.5e-224 780.8 461 81.3
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 9.8e-224 780.4 525 73.7
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 9.8e-224 780.4 524 74.0
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 4.5e-221 771.5 521 73.7
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 8.6e-220 767.3 442 84.2
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 5.6e-211 738.0 594 66.3
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 1.2e-208 730.3 577 68.6
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 4.1e-206 721.8 494 74.7
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 9.2e-206 720.7 494 73.3
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 2.8e-202 709.1 518 69.5
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 3.1e-201 705.7 498 72.5
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 1.2e-194 683.7 506 67.4
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 5.2e-193 678.3 523 66.2
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.4e-190 670.2 589 59.3
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 1.9e-187 659.8 384 83.6
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 2.4e-182 642.9 390 84.1
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 2.9e-175 619.4 506 62.6
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 1.3e-164 583.9 445 64.9
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 5.0e-119 432.6 406 54.9
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-99 366.3 253 72.7
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 9.2e-89 332.0 200 79.5
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-62 244.2 274 47.4
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-55 221.5 206 54.4
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 3.9e-55 220.3 143 76.9
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.1e-53 214.5 141 75.2
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 5.3e-52 209.9 118 93.2
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 7.1e-41 172.9 100 76.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 5.1e-39 166.8 101 76.2
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.5e-35 155.2 101 70.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 1.1e-25 122.5 65 89.2
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 1.1e-25 122.5 75 76.0
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 2.7e-24 117.9 66 78.8
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 1.0e-23 115.9 122 56.6
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 2.5e-22 111.3 136 46.3
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 4.3e-22 110.5 105 55.2
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 4.5e-19 100.5 65 72.3
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 4.5e-19 100.5 65 72.3
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 8.5e-18 96.3 67 68.7
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 8.5e-18 96.3 67 68.7
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 2.5e-17 94.7 67 71.6
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 3.0e-15 87.8 53 79.2
Pp3c17_16690 Physcomitrium patens HOM05D003318 ORTHO05D004544 1.8e-07 62.0 381 21.5
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.6e-06 58.2 38 71.1
HanXRQChr01g0028641 Helianthus annuus HOM05D005895 ORTHO05D226758 9.7e-06 56.2 51 58.8


User provided reference genes

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