Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 2.7e-49 198.4 100 100.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 2.7e-49 198.4 100 100.0
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 5.2e-45 184.1 100 91.0
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 3.5e-41 171.4 100 86.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 7.8e-41 170.2 100 85.0
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 2.3e-40 168.7 100 84.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 1.1e-39 166.4 100 83.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 5.6e-39 164.1 100 82.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 9.5e-39 163.3 100 82.0
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.6e-38 162.5 100 80.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.6e-38 162.5 100 80.0
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 3.6e-38 161.4 100 81.0
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 6.2e-38 160.6 100 87.0
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.2e-36 156.4 100 83.0
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.2e-36 156.4 100 82.0
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.5e-36 156.0 100 82.0
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 9.9e-36 153.3 100 83.0
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 9.9e-36 153.3 100 83.0
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 9.9e-36 153.3 100 81.0
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 1.3e-35 152.9 100 83.0
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.3e-35 152.9 100 83.0
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.3e-35 152.9 100 78.0
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.7e-35 152.5 99 73.7
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.9e-35 151.8 102 79.4
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.9e-35 151.8 100 80.0
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.8e-35 151.4 100 78.0
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.8e-35 151.4 100 73.0
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 8.4e-35 150.2 100 78.0
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 8.4e-35 150.2 100 82.0
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.1e-34 149.8 100 82.0
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 1.9e-34 149.1 100 78.0
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.9e-34 149.1 100 79.0
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 2.4e-34 148.7 100 77.0
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 3.2e-34 148.3 100 82.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 4.2e-34 147.9 100 78.0
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 4.2e-34 147.9 100 75.0
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.2e-34 147.9 101 73.3
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 4.2e-34 147.9 100 81.0
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 4.2e-34 147.9 98 79.6
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 7.1e-34 147.1 100 76.0
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 7.1e-34 147.1 105 78.1
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 7.1e-34 147.1 100 76.0
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.1e-34 147.1 100 76.0
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 9.2e-34 146.7 96 80.2
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.2e-33 146.4 98 77.6
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 74.0
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 74.0
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.6e-33 146.0 100 77.0
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.6e-33 146.0 100 77.0
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 1.6e-33 146.0 102 81.4
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 1.6e-33 146.0 100 76.0
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.6e-33 146.0 100 75.0
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 75.0
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 78.0
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 75.0
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.7e-33 145.2 100 75.0
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.7e-33 145.2 100 75.0
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.7e-33 145.2 100 76.0
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.7e-33 145.2 100 76.0
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 75.0
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 79.0
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 75.0
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 75.0
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.8e-33 143.7 100 77.0
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.0e-32 143.3 100 78.0
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-32 143.3 99 75.8
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 100 77.0
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 102 77.5
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.7e-32 142.5 124 64.5
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 2.3e-32 142.1 100 77.0
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 2.3e-32 142.1 101 77.2
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 3.0e-32 141.7 101 77.2
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 3.0e-32 141.7 100 75.0
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 3.0e-32 141.7 100 73.0
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 3.9e-32 141.4 100 73.0
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 3.9e-32 141.4 99 73.7
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 5.1e-32 141.0 100 71.0
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 5.1e-32 141.0 100 74.0
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 8.7e-32 140.2 100 75.0
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.1e-31 139.8 100 73.0
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.1e-31 139.8 100 73.0
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.1e-31 139.8 100 73.0
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.1e-31 139.8 100 77.0
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 1.5e-31 139.4 100 72.0
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 1.5e-31 139.4 100 72.0
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-31 139.4 100 71.0
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-31 139.4 100 71.0
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.9e-31 139.0 100 72.0
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 1.9e-31 139.0 100 72.0
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 1.9e-31 139.0 100 72.0
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.9e-31 139.0 100 71.0
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 2.5e-31 138.7 100 73.0
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.5e-31 138.7 100 73.0
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.5e-31 138.7 100 73.0
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 2.5e-31 138.7 100 72.0
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.5e-31 138.7 100 73.0
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.5e-31 138.7 100 73.0
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.5e-31 138.7 100 73.0
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 3.3e-31 138.3 100 72.0
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 3.3e-31 138.3 100 72.0
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 3.3e-31 138.3 100 73.0
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 4.3e-31 137.9 100 73.0
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 4.3e-31 137.9 110 68.2
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 4.3e-31 137.9 100 71.0
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 9.6e-31 136.7 105 70.5
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 9.6e-31 136.7 100 71.0
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 1.3e-30 136.3 100 71.0
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 1.3e-30 136.3 100 71.0
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 1.3e-30 136.3 100 71.0
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 2.1e-30 135.6 100 71.0
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.8e-30 135.2 102 72.5
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.8e-30 135.2 100 70.0
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 2.8e-30 135.2 104 76.0
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 3.6e-30 134.8 100 69.0
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 4.8e-30 134.4 100 70.0
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 4.8e-30 134.4 124 64.5
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 8.1e-30 133.7 100 71.0
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 1.4e-29 132.9 100 70.0
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.8e-29 132.5 99 68.7
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 2.4e-29 132.1 102 72.5
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 2.4e-29 132.1 102 72.5
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 3.1e-29 131.7 105 73.3
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.1e-29 131.7 76 86.8
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 4.0e-29 131.3 76 84.2
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.4e-28 128.3 94 70.2
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 3.4e-28 128.3 94 70.2
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 4.4e-28 127.9 100 69.0
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 5.8e-28 127.5 94 69.1
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 7.6e-28 127.1 98 68.4
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.3e-27 126.3 94 70.2
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 2.9e-27 125.2 100 67.0
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.9e-26 122.5 76 80.3
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 2.4e-26 122.1 99 67.7
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 4.2e-26 121.3 78 82.1
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 9.3e-26 120.2 94 67.0
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.2e-25 119.8 97 67.0
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-25 119.4 76 78.9
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-25 119.4 76 78.9
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-25 119.4 76 78.9
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 2.1e-25 119.0 100 65.0
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 3.5e-25 118.2 100 65.0
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 4.6e-25 117.9 75 78.7
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 4.6e-25 117.9 100 63.0
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 6.0e-25 117.5 81 72.8
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 3.9e-24 114.8 108 60.2
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.3e-22 109.8 99 61.6
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.1e-22 107.1 60 85.0
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 1.8e-21 105.9 85 69.4
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 3.4e-20 101.7 60 80.0
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 2.2e-19 99.0 79 65.8
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 5.4e-18 94.4 61 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 7.1e-10 67.4 94 42.6
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 9.3e-10 67.0 97 46.4
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 3.5e-09 65.1 81 42.0
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.0e-08 63.5 94 38.3


User provided reference genes

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