Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018527 Camellia sinensis var. sinensis HOM05D003180 ORTHO05D003664 4.1e-62 241.1 115 100.0
vmacro17931 Vaccinium macrocarpon HOM05D003180 ORTHO05D003664 4.3e-43 177.9 99 84.8
Rhsim08G0102500 Rhododendron simsii HOM05D003180 ORTHO05D003664 2.8e-42 175.3 99 83.8
CiPaw.02G009800 Carya illinoinensis HOM05D003180 ORTHO05D003664 7.6e-40 167.2 100 80.0
QL06p042406 Quercus lobata HOM05D003180 ORTHO05D003664 7.6e-40 167.2 99 79.8
RcHm_v2.0_Chr2g0104951 Rosa chinensis HOM05D003180 ORTHO05D003664 2.2e-39 165.6 100 77.0
Potri.007G040700 Populus trichocarpa HOM05D003180 ORTHO05D003664 6.4e-39 164.1 100 77.0
TWI73G1210 Tripterygium wilfordii HOM05D003180 ORTHO05D003664 1.4e-38 162.9 100 78.0
Cfa003992 Carpinus fangiana HOM05D003180 ORTHO05D003664 2.4e-38 162.2 100 80.0
FAN28G2645 Fragaria x ananassa HOM05D003180 ORTHO05D003664 3.2e-38 161.8 100 76.0
Duzib147G0433 Durio zibethinus HOM05D003180 ORTHO05D003664 4.2e-38 161.4 99 78.8
FvH4_1g15610 Fragaria vesca HOM05D003180 ORTHO05D003664 4.2e-38 161.4 100 75.0
FAN19G2046 Fragaria x ananassa HOM05D003180 ORTHO05D003664 4.2e-38 161.4 100 75.0
Aa31LG4G18700 Aethionema arabicum HOM05D003180 ORTHO05D003664 1.6e-37 159.5 100 74.0
FAN26G1196 Fragaria x ananassa HOM05D003180 ORTHO05D003664 3.5e-37 158.3 100 74.0
ClCG02G013170 Citrullus lanatus HOM05D003180 ORTHO05D003664 6.0e-37 157.5 99 71.7
Cpa.g.sc6.384 Carica papaya HOM05D003180 ORTHO05D003664 1.0e-36 156.8 100 72.0
Lj7C59G1 Lonicera japonica HOM05D003180 ORTHO05D003664 1.0e-36 156.8 98 72.4
Thhalv10010687m.g Eutrema salsugineum HOM05D003180 ORTHO05D003664 1.8e-36 156.0 100 73.0
Gohir.A11G189900 Gossypium hirsutum HOM05D003180 ORTHO05D003664 1.8e-36 156.0 100 76.0
Lj7C58G0 Lonicera japonica HOM05D003180 ORTHO05D003664 2.3e-36 155.6 100 71.0
Sp5g11680 Schrenkiella parvula HOM05D003180 ORTHO05D003664 2.3e-36 155.6 100 73.0
BcaB05g23220 Brassica carinata HOM05D003180 ORTHO05D003664 3.0e-36 155.2 100 73.0
BcaC09g50033 Brassica carinata HOM05D003180 ORTHO05D003664 3.0e-36 155.2 100 73.0
A01p24080 Brassica napus HOM05D003180 ORTHO05D003664 3.0e-36 155.2 100 73.0
C01p29750 Brassica napus HOM05D003180 ORTHO05D003664 3.0e-36 155.2 100 73.0
BolC1t02916H Brassica oleracea HOM05D003180 ORTHO05D003664 3.0e-36 155.2 100 73.0
BraA01t02321Z Brassica rapa HOM05D003180 ORTHO05D003664 3.0e-36 155.2 100 73.0
Carub.0005s1685 Capsella rubella HOM05D003180 ORTHO05D003664 3.0e-36 155.2 100 72.0
FAN23G2127 Fragaria x ananassa HOM05D003180 ORTHO05D003664 3.0e-36 155.2 100 72.0
Duzib264G0300 Durio zibethinus HOM05D003180 ORTHO05D003664 3.9e-36 154.8 100 77.0
AT3G50520 Arabidopsis thaliana HOM05D003180 ORTHO05D003664 6.7e-36 154.1 100 71.0
Manes.13G125800 Manihot esculenta HOM05D003180 ORTHO05D003664 6.7e-36 154.1 100 73.0
MELO3C020929.2 Cucumis melo HOM05D003180 ORTHO05D003664 8.7e-36 153.7 101 69.3
Gorai.007G210600 Gossypium raimondii HOM05D003180 ORTHO05D003664 1.1e-35 153.3 100 75.0
Gohir.D11G196700 Gossypium hirsutum HOM05D003180 ORTHO05D003664 1.5e-35 152.9 99 74.7
THA.LOC104821269 Tarenaya hassleriana HOM05D003180 ORTHO05D003664 1.5e-35 152.9 100 71.0
CsaV3_2G017260 Cucumis sativus L. HOM05D003180 ORTHO05D003664 1.9e-35 152.5 101 70.3
Sed0026779 Sechium edule HOM05D003180 ORTHO05D003664 1.9e-35 152.5 99 69.7
AL5G30670 Arabidopsis lyrata HOM05D003180 ORTHO05D003664 2.5e-35 152.1 100 71.0
TAR381G0032 Trochodendron aralioides HOM05D003180 ORTHO05D003664 2.5e-35 152.1 100 72.0
Aqoxy6G01421 Aquilegia oxysepala HOM05D003180 ORTHO05D003664 3.3e-35 151.8 99 68.7
Haze_15431 Corylus avellana HOM05D003180 ORTHO05D003664 3.3e-35 151.8 98 77.6
CARHR160020 Cardamine hirsuta HOM05D003180 ORTHO05D003664 9.6e-35 150.2 100 70.0
PSO541G2909 Papaver somniferum HOM05D003180 ORTHO05D003664 9.6e-35 150.2 101 70.3
TAR625G0854 Trochodendron aralioides HOM05D000591 ORTHO05D003664 9.6e-35 150.2 97 68.0
CANSAT01G0500 Cannabis sativa HOM05D003180 ORTHO05D003664 1.3e-34 149.8 100 72.0
Ciclev10026175m.g Citrus clementina HOM05D003180 ORTHO05D003664 1.6e-34 149.4 100 69.0
arahy.Tifrunner.gnm1.ann1.UDMY6J Arachis hypogaea HOM05D003180 ORTHO05D003664 2.1e-34 149.1 100 69.0
PSO675G0370 Papaver somniferum HOM05D003180 ORTHO05D003664 2.8e-34 148.7 101 69.3
Thecc.01G051900 Theobroma cacao HOM05D003180 ORTHO05D003664 4.8e-34 147.9 100 73.0
arahy.Tifrunner.gnm1.ann1.0LCG0H Arachis hypogaea HOM05D003180 ORTHO05D003664 6.2e-34 147.5 100 69.0
DCAR_025713 Daucus carota HOM05D003180 ORTHO05D003664 6.2e-34 147.5 99 68.7
Prupe.7G136800 Prunus persica HOM05D003180 ORTHO05D003664 8.1e-34 147.1 100 71.0
Sc03g0001380 Simmondsia chinensis HOM05D003180 ORTHO05D003664 8.1e-34 147.1 100 66.0
Cc07_g05810 Coffea canephora HOM05D003180 ORTHO05D003664 1.4e-33 146.4 100 70.0
Glyma.05G080400 Glycine max HOM05D003180 ORTHO05D003664 1.4e-33 146.4 99 67.7
Phvul.003G246100 Phaseolus vulgaris HOM05D003180 ORTHO05D003664 1.4e-33 146.4 99 68.7
TPR.G19019 Trifolium pratense HOM05D003180 ORTHO05D003664 1.4e-33 146.4 100 69.0
Eucgr.I00966 Eucalyptus grandis HOM05D003180 ORTHO05D003664 1.8e-33 146.0 99 70.7
MBI02_g44921_MAGBIO Magnolia biondii HOM05D003180 ORTHO05D003664 1.8e-33 146.0 100 70.0
Oeu004871.1 Olea europaea HOM05D003180 ORTHO05D003664 2.4e-33 145.6 100 71.0
HanXRQChr15g0490001 Helianthus annuus HOM05D003180 ORTHO05D003664 3.1e-33 145.2 101 69.3
Lsat_1_v5_gn_4_169080 Lactuca sativa HOM05D000369 ORTHO05D000253 3.1e-33 145.2 101 71.3
MBI02_g21207_MAGBIO Magnolia biondii HOM05D003180 ORTHO05D003664 3.1e-33 145.2 99 69.7
VMungo0251G3329 Vigna mungo HOM05D003180 ORTHO05D003664 3.1e-33 145.2 99 68.7
Ca_22192_v3 Cicer arietinum L. HOM05D003180 ORTHO05D003664 6.9e-33 144.1 100 70.0
Lalb_Chr05g0226691 Lupinus albus HOM05D003180 ORTHO05D003664 6.9e-33 144.1 100 66.0
SGA_v2.0_scaffold15G07257 Striga asiatica HOM05D003180 ORTHO05D003664 6.9e-33 144.1 100 68.0
Eucgr.I00967 Eucalyptus grandis HOM05D003180 ORTHO05D003664 1.2e-32 143.3 99 66.7
Nitab4.5_0000440g0150 Nicotiana tabacum HOM05D003180 ORTHO05D003664 1.2e-32 143.3 99 67.7
Psat4g088040 Pisum sativum HOM05D003180 ORTHO05D003664 1.5e-32 142.9 100 70.0
Ah.03g144400 Amaranthus hybridus HOM05D003180 ORTHO05D003664 2.0e-32 142.5 100 65.0
BolC7t45099H Brassica oleracea HOM05D003180 ORTHO05D003664 3.4e-32 141.7 113 62.8
AUR62001958 Chenopodium quinoa HOM05D003180 ORTHO05D003664 3.4e-32 141.7 100 62.0
ECA232G4852 Erigeron canadensis HOM05D000369 ORTHO05D000253 3.4e-32 141.7 101 66.3
Peaxi162Scf00049g01317 Petunia axillaris HOM05D003180 ORTHO05D003664 3.4e-32 141.7 100 66.0
AUR62003848 Chenopodium quinoa HOM05D003180 ORTHO05D003664 4.5e-32 141.4 100 62.0
COL.COLO4_11375 Corchorus olitorius HOM05D003180 ORTHO05D003664 4.5e-32 141.4 91 71.4
Lj4g0023396 Lotus japonicus HOM05D003180 ORTHO05D003664 5.8e-32 141.0 100 67.0
MD15G1280500 Malus domestica HOM05D003180 ORTHO05D003664 5.8e-32 141.0 100 67.0
MD02G1168200 Malus domestica HOM05D003180 ORTHO05D003664 1.3e-31 139.8 100 69.0
Migut.H00458 Erythranthe guttata HOM05D003180 ORTHO05D003664 1.7e-31 139.4 100 66.0
HanXRQChr15g0489981 Helianthus annuus HOM05D003180 ORTHO05D003664 1.7e-31 139.4 102 64.7
Duzib187G0486 Durio zibethinus HOM05D003180 ORTHO05D003664 2.2e-31 139.0 99 66.7
Nitab4.5_0000728g0090 Nicotiana tabacum HOM05D003180 ORTHO05D003664 2.9e-31 138.7 100 65.0
ATR1133G056 Amborella trichopoda HOM05D003180 ORTHO05D003664 3.8e-31 138.3 101 65.3
Nitab4.5_0004123g0010 Nicotiana tabacum HOM05D003180 ORTHO05D003664 3.8e-31 138.3 100 65.0
PGSC0003DMG400000753 Solanum tuberosum HOM05D003180 ORTHO05D003664 6.5e-31 137.5 100 65.0
MSTRG.23771 Avicennia marina HOM05D003180 ORTHO05D003664 1.4e-30 136.3 100 65.0
Solyc02g065080.3 Solanum lycopersicum HOM05D003180 ORTHO05D003664 1.9e-30 136.0 100 64.0
Sopen02g015240 Solanum pennellii HOM05D003180 ORTHO05D003664 1.9e-30 136.0 100 64.0
Eucgr.I00962 Eucalyptus grandis HOM05D003180 ORTHO05D003664 3.2e-30 135.2 99 62.6
Medtr8g079780 Medicago truncatula HOM05D003180 ORTHO05D003664 4.2e-30 134.8 100 65.0
Eucgr.I00964 Eucalyptus grandis HOM05D003180 ORTHO05D003664 1.2e-29 133.3 99 63.6
CSS0036818 Camellia sinensis var. sinensis HOM05D003180 ORTHO05D003664 1.6e-29 132.9 100 63.0
CAN.G470.17 Capsicum annuum HOM05D003180 ORTHO05D003664 1.6e-29 132.9 100 61.0
BcaC06g33091 Brassica carinata HOM05D003180 ORTHO05D003664 2.1e-29 132.5 97 63.9
Hund16314 Selenicereus undatus HOM05D003180 ORTHO05D003664 3.5e-29 131.7 100 61.0
Rhsim06G0046200 Rhododendron simsii HOM05D003180 ORTHO05D003664 4.6e-29 131.3 98 61.2
Atru.chr13.623 Acer truncatum HOM05D003180 ORTHO05D003664 1.0e-28 130.2 100 59.0
Ah.02g124030 Amaranthus hybridus HOM05D000144 ORTHO05D003364 8.7e-28 127.1 97 58.8
Lj7C61G5 Lonicera japonica HOM05D003180 ORTHO05D003664 8.7e-28 127.1 83 67.5
Lalb_Chr16g0388381 Lupinus albus HOM05D003180 ORTHO05D003664 2.5e-27 125.6 97 62.9
Gohir.A12G083066 Gossypium hirsutum HOM05D003180 ORTHO05D003664 5.7e-27 124.4 96 61.5
Gohir.D12G088900 Gossypium hirsutum HOM05D003180 ORTHO05D003664 5.7e-27 124.4 96 61.5
Gorai.008G074200 Gossypium raimondii HOM05D003180 ORTHO05D003664 5.7e-27 124.4 96 61.5
Lj4g0007404 Lotus japonicus HOM05D003180 ORTHO05D003664 9.6e-27 123.6 99 56.6
BcaC06g33304 Brassica carinata HOM05D003180 ORTHO05D003664 2.1e-26 122.5 103 59.2
C07p45780 Brassica napus HOM05D003180 ORTHO05D003664 2.1e-26 122.5 103 59.2
Aa31LG3G870 Aethionema arabicum HOM05D003180 ORTHO05D003664 8.2e-26 120.6 86 67.4
CDE10G0039 Ceratophyllum demersum HOM05D003180 ORTHO05D003664 1.4e-25 119.8 102 54.9
HPP92_010952 Vanilla planifolia HOM05D003180 ORTHO05D003664 3.1e-25 118.6 100 54.0
unitig_736.g22659 Utricularia gibba HOM05D003180 ORTHO05D003664 4.1e-25 118.2 98 56.1
SEGI_16709 Sequoiadendron giganteum HOM05D003180 ORTHO05D003664 6.9e-25 117.5 99 52.5
C02p01670 Brassica napus HOM05D003180 ORTHO05D003664 4.5e-24 114.8 94 55.3
THA.LOC104826890 Tarenaya hassleriana HOM05D003180 ORTHO05D003664 4.5e-24 114.8 95 56.8
MD15G1280400 Malus domestica HOM05D003180 ORTHO05D003664 5.9e-24 114.4 88 62.5
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 5.9e-24 114.4 99 52.5
BolC2t06132H Brassica oleracea HOM05D003180 ORTHO05D003664 1.3e-23 113.2 94 54.3
Thhalv10015526m.g Eutrema salsugineum HOM05D003180 ORTHO05D003664 1.3e-23 113.2 95 53.7
TWI53G0684 Tripterygium wilfordii HOM05D003180 ORTHO05D003664 1.3e-23 113.2 99 51.5
AT5G04120 Arabidopsis thaliana HOM05D003180 ORTHO05D003664 1.7e-23 112.8 94 55.3
TAR633G2013 Trochodendron aralioides HOM05D003180 ORTHO05D003664 1.7e-23 112.8 94 52.1
Carub.0006s0307 Capsella rubella HOM05D003180 ORTHO05D003664 2.2e-23 112.5 94 54.3
PSO339G0869 Papaver somniferum HOM05D003180 ORTHO05D003664 2.2e-23 112.5 94 51.1
Aqoxy1G00384 Aquilegia oxysepala HOM05D003180 ORTHO05D003664 2.9e-23 112.1 95 51.6
A10p32010 Brassica napus HOM05D003180 ORTHO05D003664 2.9e-23 112.1 95 51.6
BraA10t45245Z Brassica rapa HOM05D003180 ORTHO05D003664 2.9e-23 112.1 95 51.6
PSO339G4170 Papaver somniferum HOM05D003180 ORTHO05D003664 2.9e-23 112.1 94 50.0
PSO384G1806 Papaver somniferum HOM05D003180 ORTHO05D003664 2.9e-23 112.1 94 51.1
PSO384G2781 Papaver somniferum HOM05D003180 ORTHO05D003664 2.9e-23 112.1 94 50.0
AL6G13740 Arabidopsis lyrata HOM05D003180 ORTHO05D003664 3.8e-23 111.7 94 54.3
BcaB05g21773 Brassica carinata HOM05D003180 ORTHO05D003664 3.8e-23 111.7 94 54.3
PSO384G3113 Papaver somniferum HOM05D003180 ORTHO05D003664 3.8e-23 111.7 94 50.0
BcaC06g32115 Brassica carinata HOM05D003180 ORTHO05D003664 5.0e-23 111.3 95 51.6
C09p72730 Brassica napus HOM05D003180 ORTHO05D003664 5.0e-23 111.3 95 51.6
BolC9t60012H Brassica oleracea HOM05D003180 ORTHO05D003664 5.0e-23 111.3 95 51.6
BraA02t04798Z Brassica rapa HOM05D003180 ORTHO05D003664 5.0e-23 111.3 94 54.3
BcaC03g16892 Brassica carinata HOM05D003180 ORTHO05D003664 6.5e-23 110.9 95 51.6
A02p30370 Brassica napus HOM05D003180 ORTHO05D003664 6.5e-23 110.9 95 51.6
C02p47890 Brassica napus HOM05D003180 ORTHO05D003664 6.5e-23 110.9 95 51.6
BraA02t08052Z Brassica rapa HOM05D003180 ORTHO05D003664 6.5e-23 110.9 95 51.6
Duzib264G0339 Durio zibethinus HOM05D003180 ORTHO05D003664 6.5e-23 110.9 84 61.9
PSO339G2845 Papaver somniferum HOM05D003180 ORTHO05D003664 6.5e-23 110.9 94 50.0
PSO384G1057 Papaver somniferum HOM05D003180 ORTHO05D003664 6.5e-23 110.9 94 50.0
Aa31LG1G21340 Aethionema arabicum HOM05D003180 ORTHO05D003664 8.4e-23 110.5 94 53.2
BcaB05g21786 Brassica carinata HOM05D003180 ORTHO05D003664 8.4e-23 110.5 94 53.2
Phvul.003G246200 Phaseolus vulgaris HOM05D003180 ORTHO05D003664 8.4e-23 110.5 100 56.0
Hund13571 Selenicereus undatus HOM05D003180 ORTHO05D003664 8.4e-23 110.5 100 52.0
TAR623G0596 Trochodendron aralioides HOM05D003180 ORTHO05D003664 8.4e-23 110.5 95 49.5
BcaB05g21776 Brassica carinata HOM05D003180 ORTHO05D003664 1.1e-22 110.2 94 53.2
MD15G1280300 Malus domestica HOM05D003180 ORTHO05D003664 1.4e-22 109.8 89 59.6
Aa31LG1G21210 Aethionema arabicum HOM05D003180 ORTHO05D003664 1.9e-22 109.4 94 53.2
CARHR209150 Cardamine hirsuta HOM05D003180 ORTHO05D003664 1.9e-22 109.4 94 53.2
Glyma.05G080500 Glycine max HOM05D003180 ORTHO05D003664 3.2e-22 108.6 98 53.1
Aqoxy1G00385 Aquilegia oxysepala HOM05D003180 ORTHO05D003664 9.3e-22 107.1 95 48.4
Eucgr.I00961 Eucalyptus grandis HOM05D003180 ORTHO05D003664 1.6e-21 106.3 85 61.2
Pp3c24_9340 Physcomitrium patens HOM05D003180 ORTHO05D003664 2.1e-21 105.9 99 51.5
Eucgr.I00955 Eucalyptus grandis HOM05D003180 ORTHO05D003664 2.7e-21 105.5 85 60.0
Psat4g088120 Pisum sativum HOM05D003180 ORTHO05D003664 2.7e-21 105.5 84 56.0
Eucgr.I00958 Eucalyptus grandis HOM05D003180 ORTHO05D003664 3.5e-21 105.1 85 60.0
TPR.G15258 Trifolium pratense HOM05D003180 ORTHO05D003664 4.6e-21 104.8 82 56.1
Oeu042248.1 Olea europaea HOM05D003180 ORTHO05D003664 6.1e-21 104.4 80 60.0
Medtr8g079760 Medicago truncatula HOM05D003180 ORTHO05D003664 3.0e-20 102.1 83 54.2
HanXRQChr14g0441141 Helianthus annuus HOM05D003180 ORTHO05D003664 8.7e-20 100.5 74 64.9
SMO270G0094 Selaginella moellendorffii HOM05D003180 ORTHO05D003664 1.9e-19 99.4 99 45.5
AUR62027514 Chenopodium quinoa HOM05D003180 ORTHO05D003664 4.3e-19 98.2 85 52.9
Os08g0476400 Oryza sativa ssp. japonica HOM05D003180 ORTHO05D003664 4.3e-19 98.2 101 50.5
Mapoly0136s0032 Marchantia polymorpha HOM05D003180 ORTHO05D003664 5.7e-19 97.8 94 46.8
Dinv35999 Davidia involucrata HOM05D003180 ORTHO05D003664 2.8e-18 95.5 67 64.2
TPR.G19013 Trifolium pratense HOM05D003180 ORTHO05D003664 1.1e-17 93.6 84 53.6
Dinv29962 Davidia involucrata HOM05D003180 ORTHO05D003664 2.4e-17 92.4 83 55.4
EL10Ac6g15148 Beta vulgaris HOM05D003180 ORTHO05D003664 1.0e-15 87.0 70 57.1
Os11g0138400 Oryza sativa ssp. japonica HOM05D003180 ORTHO05D003664 2.2e-15 85.9 102 45.1
Os11g0138600 Oryza sativa ssp. japonica HOM05D003180 ORTHO05D003664 8.5e-15 84.0 88 46.6
TWI53G2069 Tripterygium wilfordii HOM05D003180 ORTHO05D003664 1.9e-14 82.8 50 74.0
MBI19_g22600_MAGBIO Magnolia biondii HOM05D003180 ORTHO05D003664 2.1e-13 79.3 77 45.5
Atru.chr3.403 Acer truncatum HOM05D003180 ORTHO05D003664 1.4e-12 76.6 46 67.4
Sc03g0001390 Simmondsia chinensis HOM05D003180 ORTHO05D003664 1.8e-12 76.3 99 39.4
Actinidia15263 Actinidia chinensis HOM05D003180 ORTHO05D003664 2.3e-12 75.9 48 68.8
CiPaw.01G022000 Carya illinoinensis HOM05D003180 ORTHO05D003664 3.9e-12 75.1 50 72.0
Os12g0135100 Oryza sativa ssp. japonica HOM05D003180 ORTHO05D003664 1.3e-10 70.1 113 36.3
CBR_g64839 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-09 64.7 74 40.5
Hund13572 Selenicereus undatus HOM05D003180 ORTHO05D003664 1.5e-08 63.2 50 54.0
Nn7g36805 Nelumbo nucifera HOM05D003180 ORTHO05D003664 1.3e-07 60.1 55 50.9
MBI19_g42984_MAGBIO Magnolia biondii HOM05D003180 ORTHO05D003664 5.5e-06 54.7 43 51.2


User provided reference genes

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