Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 2.2e-73 278.9 138 100.0
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 9.1e-32 140.6 153 55.6
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 2.3e-27 125.9 160 51.2
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 6.8e-27 124.4 160 50.0
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 2.0e-26 122.9 146 51.4
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 9.8e-26 120.6 158 50.6
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 3.7e-25 118.6 143 52.4
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 3.7e-25 118.6 152 53.9
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.8e-24 116.3 162 49.4
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 2.7e-23 112.5 156 51.3
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 3.5e-23 112.1 165 47.3
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 3.5e-23 112.1 165 46.7
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 4.6e-23 111.7 127 53.5
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 2.3e-22 109.4 161 50.3
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 1.9e-21 106.3 166 47.0
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 1.9e-21 106.3 160 45.6
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 7.3e-21 104.4 157 48.4
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 2.1e-20 102.8 161 46.6
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 3.6e-20 102.1 159 44.7
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.4e-19 100.1 164 45.7
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 6.8e-19 97.8 162 43.2
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 8.9e-19 97.4 159 41.5
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 5.8e-18 94.7 171 41.5
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 5.8e-18 94.7 158 44.9
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 1.3e-17 93.6 168 39.9
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 2.2e-17 92.8 143 47.6
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 2.9e-17 92.4 172 40.1
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 2.9e-17 92.4 172 40.1
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 1.1e-16 90.5 168 41.7
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 4.1e-16 88.6 140 45.7
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 5.4e-16 88.2 140 45.7
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 5.4e-16 88.2 159 44.0
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 7.0e-16 87.8 140 45.7
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 9.2e-16 87.4 140 45.0
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.6e-15 86.7 160 39.4
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 6.0e-15 84.7 149 45.0
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 1.3e-14 83.6 172 42.4
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 3.0e-14 82.4 160 40.6
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 6.6e-14 81.3 152 43.4
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 1.9e-13 79.7 165 37.6
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 4.3e-13 78.6 170 39.4
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 1.2e-12 77.0 156 38.5
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 8.1e-12 74.3 165 35.8
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 3.1e-11 72.4 165 37.6
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 5.2e-11 71.6 159 40.3
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 6.8e-11 71.2 151 38.4
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 8.9e-11 70.9 159 40.3
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 1.2e-10 70.5 136 44.1
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 2.0e-10 69.7 167 37.1
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 3.4e-10 68.9 146 41.8
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 9.8e-10 67.4 152 38.2
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 2.9e-09 65.9 136 39.0
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 3.7e-09 65.5 164 33.5
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 4.9e-09 65.1 161 35.4
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 4.9e-09 65.1 136 38.2
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 6.4e-09 64.7 133 42.1
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 9.2e-08 60.8 166 35.5
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 2.1e-07 59.7 156 37.8
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 2.7e-07 59.3 158 36.7
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 3.5e-07 58.9 153 35.3
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 4.6e-07 58.5 157 37.6
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 1.0e-06 57.4 142 36.6
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 1.7e-06 56.6 79 41.8
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 2.3e-06 56.2 158 38.6
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 6.6e-06 54.7 136 33.8
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 8.6e-06 54.3 94 42.6
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 8.6e-06 54.3 173 32.4


User provided reference genes

Program Settings