Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 2426.0 1239 100.0
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1908.6 1279 77.6
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1887.8 1290 75.6
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1871.7 1321 74.2
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1857.4 1277 75.3
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1851.3 1250 75.5
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1820.1 1277 73.8
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1807.3 1252 74.2
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1801.9 1279 72.7
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1795.8 1276 72.3
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1794.6 1275 72.9
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1791.9 1280 73.0
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1788.1 1279 72.6
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1786.5 1262 72.5
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1785.4 1279 72.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1778.8 1269 72.6
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1774.2 1277 73.3
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1770.0 1277 71.9
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1760.7 1271 71.0
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1753.8 1277 71.9
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1751.5 1299 70.4
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1750.7 1269 71.7
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1741.5 1269 71.6
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1740.3 1257 71.0
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1731.1 1257 71.6
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1727.2 1252 71.7
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1724.5 1263 69.6
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1723.0 1250 70.6
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1721.8 1280 70.5
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1720.7 1329 68.2
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1272 69.7
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1716.4 1282 69.9
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1714.1 1263 69.9
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1710.3 1273 70.4
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1707.6 1255 70.0
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1707.2 1284 68.4
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1704.1 1268 69.2
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1703.7 1255 70.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1701.4 1262 69.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1700.6 1279 68.8
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1699.9 1279 69.3
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1698.7 1253 70.7
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1697.2 1270 69.0
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1695.2 1277 68.8
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1694.9 1255 69.4
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1692.9 1273 68.5
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1692.2 1333 67.0
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1689.1 1269 69.0
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1687.9 1254 69.5
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1687.5 1276 68.7
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1686.8 1274 67.4
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1686.0 1255 69.3
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1682.9 1273 68.5
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1682.2 1245 69.6
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1681.0 1275 68.5
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1681.0 1272 68.4
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1679.1 1260 69.3
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1679.1 1271 68.8
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1669.8 1275 68.5
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1669.1 1255 68.9
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1665.6 1326 66.3
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1662.1 1279 69.4
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1659.8 1275 67.5
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1647.5 1184 72.3
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1640.6 1274 68.0
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1640.2 1274 67.8
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1637.5 1181 71.1
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1636.3 1270 67.3
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1635.9 1271 67.7
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1620.5 1009 81.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1614.4 1272 66.3
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1602.4 1275 66.0
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1600.9 1311 65.1
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1597.4 1258 67.3
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1597.0 1274 66.1
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1592.8 1172 69.8
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1592.8 1270 65.9
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1583.9 1309 64.5
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1583.5 1276 66.2
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1575.5 1277 65.9
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1575.5 1278 65.6
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1573.1 1274 65.5
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1564.3 1273 65.5
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1563.9 1273 65.5
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1546.6 1190 68.2
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1546.6 1158 68.9
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1530.0 1253 64.1
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1526.5 1273 64.7
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1502.3 1207 65.9
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1471.8 1023 73.0
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1468.8 1263 62.2
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1423.3 1247 60.2
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1401.0 1253 59.6
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1385.9 1251 59.2
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1382.9 1271 57.7
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1315.1 1039 67.5
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1269.2 1272 57.7
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1212.6 884 70.6
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1148.7 959 64.0
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1127.1 964 60.7
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1095.5 1236 48.8
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1086.6 886 64.7
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1083.9 1248 47.7
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 5.4e-309 1064.7 680 79.6
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 6.0e-300 1034.6 790 67.5
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.9e-285 986.5 815 64.5
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 3.8e-278 962.2 1198 46.2
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 5.7e-250 868.6 1201 42.9
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 3.3e-221 773.1 558 71.3
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.7e-209 734.2 1278 36.7
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.2e-192 676.8 486 72.0
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 4.5e-178 629.8 600 57.2
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.8e-177 626.7 492 67.7
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.3e-174 618.2 620 55.3
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 3.9e-174 616.7 1064 37.8
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 9.0e-171 605.5 659 52.7
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 4.2e-168 596.7 1222 32.8
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 5.3e-131 473.4 702 44.0
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 7.2e-128 463.0 276 83.0
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.0e-126 457.6 332 68.1
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.8e-124 451.1 1159 30.6
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.6e-98 365.5 253 76.7
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.0e-97 362.8 341 56.6
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 8.1e-95 353.2 253 74.3
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.4e-84 317.0 267 61.0
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.4e-84 317.0 267 61.0
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.3e-76 292.7 200 74.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 9.3e-75 286.6 237 61.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.8e-62 245.7 182 70.3
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 1.0e-57 229.9 174 70.1
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.6e-55 222.6 161 72.7
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.5e-51 207.6 157 67.5
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 8.8e-41 173.7 104 76.9
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 4.1e-38 164.9 114 78.9
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.3e-36 159.8 135 64.4
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 7.0e-30 137.5 1219 21.9
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.5e-29 136.3 120 64.2
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 5.2e-25 121.3 187 43.3
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 2.4e-22 112.5 115 51.3
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.2e-21 110.2 115 49.6
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 6.5e-20 104.4 95 54.7
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.6e-18 99.8 132 40.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 1.0e-17 97.1 157 38.2
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 5.2e-17 94.7 120 43.3
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 2.0e-16 92.8 162 39.5
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 4.4e-16 91.7 62 75.8
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 3.1e-14 85.5 123 41.5
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 6.5e-12 77.8 47 83.0
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 8.5e-12 77.4 123 35.8
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 1.1e-11 77.0 151 35.1
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 7.2e-11 74.3 270 27.0
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.2e-10 73.6 355 25.4
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.5e-08 66.6 65 53.8
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 3.4e-08 65.5 46 71.7
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 9.1e-06 57.4 56 57.1


User provided reference genes

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