Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 0.0e+00 1116.3 555 100.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 4.2e-269 931.0 548 84.1
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 3.0e-259 898.3 539 83.1
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.9e-251 871.3 560 77.9
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 7.7e-247 857.1 558 77.2
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 2.2e-246 855.5 557 77.0
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 3.8e-246 854.7 559 76.0
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.5e-245 852.8 516 82.2
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.6e-244 849.4 558 76.3
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 2.7e-244 848.6 558 77.1
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.7e-244 848.6 559 75.8
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 6.1e-244 847.4 558 75.6
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 8.0e-244 847.0 516 81.8
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 5.2e-243 844.3 546 76.9
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.3e-242 841.6 549 76.3
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 4.4e-242 841.3 559 74.4
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 9.1e-240 833.6 572 73.3
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.2e-239 833.2 557 75.6
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.6e-239 832.8 559 76.9
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 2.7e-239 832.0 572 73.3
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 4.5e-239 831.2 560 74.1
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.9e-238 828.6 537 77.7
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 5.0e-238 827.8 559 75.1
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 6.5e-238 827.4 532 76.9
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.2e-236 823.2 556 73.7
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.1e-236 822.4 562 74.2
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 3.6e-236 821.6 562 74.0
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 8.0e-236 820.5 520 78.7
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 8.0e-236 820.5 559 73.9
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.4e-235 819.7 535 76.8
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 1.8e-235 819.3 558 73.3
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 8.8e-235 817.0 558 73.5
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.2e-234 816.6 558 73.7
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.0e-234 815.8 556 75.0
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 3.7e-233 811.6 532 76.9
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 3.7e-233 811.6 519 78.8
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 6.3e-233 810.8 517 77.4
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 1.1e-232 810.1 547 74.0
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 4.1e-232 808.1 560 72.0
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 4.1e-232 808.1 518 78.4
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.0e-231 805.8 517 76.8
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 2.0e-231 805.8 546 74.7
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 2.0e-231 805.8 546 74.5
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 5.9e-231 804.3 547 74.2
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 7.7e-231 803.9 517 76.8
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.0e-230 803.5 517 76.8
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.3e-230 803.1 537 73.9
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.1e-229 800.0 517 76.4
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.5e-229 799.7 480 81.0
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.9e-229 799.3 489 79.8
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.2e-229 798.5 522 76.1
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 6.8e-227 790.8 552 71.7
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 2.6e-226 788.9 546 73.1
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 2.6e-226 788.9 489 78.1
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.3e-225 784.3 546 73.1
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 2.0e-223 779.2 533 73.7
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.7e-223 778.9 546 72.3
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 4.5e-223 778.1 534 73.4
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 7.8e-223 777.3 546 72.5
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 7.8e-223 777.3 546 72.7
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.3e-222 776.5 547 71.7
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.5e-221 773.1 513 75.0
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.5e-221 773.1 468 79.5
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.9e-221 772.7 546 72.2
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.9e-221 772.7 559 70.8
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 4.3e-221 771.5 547 71.7
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 1.2e-220 770.0 533 73.2
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.2e-220 770.0 524 73.5
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.6e-220 769.6 516 75.6
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 2.8e-220 768.8 488 76.8
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 2.8e-220 768.8 560 70.0
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.1e-220 767.7 547 71.7
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 3.0e-219 765.4 523 73.2
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 4.4e-218 761.5 562 70.1
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 7.5e-218 760.8 523 73.0
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 9.8e-218 760.4 627 63.6
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 1.3e-217 760.0 531 71.6
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 2.2e-217 759.2 524 73.3
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 8.3e-217 757.3 558 68.3
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 2.4e-216 755.7 560 69.3
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.2e-216 755.4 523 71.7
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 3.2e-216 755.4 555 69.2
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 5.4e-216 754.6 545 69.9
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 9.2e-216 753.8 544 72.2
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.6e-215 753.1 545 70.1
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.6e-215 753.1 534 70.8
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 3.5e-215 751.9 560 67.9
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 2.3e-214 749.2 485 76.7
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.3e-213 745.3 557 66.1
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.6e-212 743.0 558 66.3
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 4.7e-212 741.5 548 68.1
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 6.2e-212 741.1 558 68.5
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 8.0e-212 740.7 546 69.0
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 1.4e-211 740.0 531 70.1
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 1.4e-211 740.0 554 67.3
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 3.1e-211 738.8 554 68.2
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 3.1e-211 738.8 557 67.5
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 5.2e-211 738.0 548 67.7
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.5e-210 736.5 462 76.8
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 2.6e-210 735.7 547 67.6
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 9.8e-210 733.8 559 67.3
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.9e-205 719.5 555 67.6
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 2.5e-205 719.2 545 67.3
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 2.5e-205 719.2 545 66.8
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 2.1e-204 716.1 545 67.0
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 6.2e-204 714.5 545 66.6
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.8e-203 713.0 560 65.7
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 6.8e-203 711.1 545 66.6
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.5e-202 709.9 545 66.1
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 9.2e-200 700.7 511 70.5
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.6e-199 699.9 523 66.7
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.6e-199 699.9 523 66.7
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 3.5e-199 698.7 540 65.0
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 7.3e-197 691.0 546 66.1
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 9.5e-197 690.6 406 80.8
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 4.7e-196 688.3 548 68.4
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 1.5e-194 683.3 548 64.4
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.9e-184 649.8 572 61.0
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.2e-183 647.1 508 65.2
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.3e-182 643.7 402 74.9
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 1.1e-179 634.0 543 61.9
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 3.4e-178 629.0 563 59.0
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.9e-173 613.2 530 60.2
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 5.3e-171 605.1 502 62.2
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 5.6e-165 585.1 373 79.4
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 6.5e-161 571.6 435 68.0
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 5.5e-160 568.5 501 57.9
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 4.6e-159 565.5 559 55.3
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.5e-157 559.7 558 56.6
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 6.1e-151 538.5 579 51.8
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.2e-148 530.0 558 52.0
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.8e-142 508.1 362 71.5
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 3.1e-139 499.6 431 62.4
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.5e-133 480.7 389 68.9
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.4e-131 473.4 583 46.5
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 9.1e-131 471.5 478 54.0
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 6.5e-129 465.3 548 46.5
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 5.5e-128 462.2 381 63.8
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.9e-121 439.9 533 46.7
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.3e-108 397.9 414 56.3
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.2e-100 370.5 306 56.2
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 2.9e-100 370.2 532 41.5
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 1.6e-98 364.4 519 44.3
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 4.7e-71 273.1 165 83.6
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 4.0e-62 243.4 244 55.7
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 2.7e-58 230.7 459 32.7
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.3e-57 227.6 237 56.1
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 1.1e-48 198.7 422 32.2
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 5.3e-46 189.9 464 31.5
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.4e-43 181.8 157 67.5
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 4.2e-43 180.3 168 63.7
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 9.3e-43 179.1 111 81.1
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 3.5e-42 177.2 404 31.7
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 6.0e-42 176.4 91 86.8
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.3e-41 175.3 97 82.5
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.5e-40 171.0 385 35.1
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 2.8e-39 167.5 171 50.3
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.4e-38 164.5 118 67.8
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 1.5e-37 161.8 157 58.0
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 2.4e-22 111.3 86 59.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.9e-20 104.4 159 40.9
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 7.0e-14 83.2 40 95.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.1e-11 75.9 40 85.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.5e-11 75.5 48 70.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 1.5e-08 65.5 33 81.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 2.0e-08 65.1 108 41.7
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 4.4e-08 63.9 32 87.5
Zm00001eb115120 Zea mays HOM05D000992 ORTHO05D001928 4.8e-07 60.5 231 25.1


User provided reference genes

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