Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.2e-118 429.9 217 100.0
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.7e-113 411.0 229 91.7
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.4e-111 406.4 217 96.3
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.4e-73 278.5 248 67.7
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.2e-66 255.0 126 96.8
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 8.9e-58 227.6 125 84.8
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 5.8e-57 224.9 126 82.5
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 4.2e-55 218.8 126 82.5
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.7e-54 216.1 126 78.6
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.7e-54 216.1 126 78.6
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 6.0e-54 214.9 125 80.8
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 6.0e-54 214.9 125 80.8
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.3e-53 213.8 126 78.6
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 3.0e-53 212.6 126 77.0
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 6.6e-53 211.5 126 75.4
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 2.1e-51 206.5 126 73.8
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.1e-51 206.5 126 76.2
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.8e-50 203.4 126 73.0
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.4e-50 203.0 126 69.8
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.1e-50 202.6 126 73.8
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 4.0e-50 202.2 125 74.4
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 5.3e-50 201.8 126 73.0
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.5e-49 200.3 126 74.6
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 2.6e-49 199.5 126 71.4
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 3.4e-49 199.1 125 73.6
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 4.5e-49 198.7 126 73.0
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 9.9e-49 197.6 126 71.4
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.3e-48 197.2 126 73.0
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.7e-48 196.8 125 73.6
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 2.2e-48 196.4 125 70.4
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 2.9e-48 196.1 126 71.4
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.9e-48 196.1 125 72.8
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.9e-48 196.1 125 72.8
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.9e-48 196.1 125 72.8
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.9e-48 196.1 125 72.8
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 4.9e-48 195.3 125 70.4
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 4.9e-48 195.3 126 72.2
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 1.4e-47 193.7 126 73.8
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.9e-47 193.4 125 72.0
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 3.2e-47 192.6 126 71.4
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 4.2e-47 192.2 125 72.0
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 4.2e-47 192.2 126 72.2
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.2e-47 192.2 126 72.2
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 9.3e-47 191.0 126 69.8
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 2.1e-46 189.9 126 69.0
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 2.1e-46 189.9 126 69.0
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 4.6e-46 188.7 125 68.8
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 4.6e-46 188.7 125 70.4
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 4.6e-46 188.7 126 66.7
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 4.6e-46 188.7 126 70.6
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 6.0e-46 188.3 126 67.5
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 6.0e-46 188.3 126 69.0
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 6.0e-46 188.3 126 69.8
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 6.0e-46 188.3 126 69.8
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.0e-45 187.6 126 68.3
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 1.0e-45 187.6 126 69.8
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.0e-45 187.6 126 67.5
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.3e-45 187.2 126 69.8
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.3e-45 187.2 126 71.4
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 2.3e-45 186.4 126 68.3
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 3.0e-45 186.0 126 66.7
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 6.7e-45 184.9 126 67.5
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 8.7e-45 184.5 125 68.0
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 8.7e-45 184.5 125 68.0
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.1e-44 184.1 126 66.7
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.5e-44 183.7 126 66.7
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.9e-44 183.3 126 69.0
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 2.5e-44 183.0 125 65.6
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 2.5e-44 183.0 125 67.2
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 3.3e-44 182.6 125 67.2
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.3e-44 182.2 126 68.3
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 7.4e-44 181.4 126 66.7
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.6e-43 180.3 125 68.0
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.1e-43 179.9 125 68.0
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 3.6e-43 179.1 125 66.4
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 6.2e-43 178.3 130 62.3
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 8.1e-43 177.9 126 68.3
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.1e-42 177.6 126 65.9
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.1e-42 177.6 126 67.5
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 1.8e-42 176.8 125 66.4
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 2.4e-42 176.4 120 65.8
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 3.1e-42 176.0 126 65.9
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 5.3e-42 175.3 126 65.9
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 5.3e-42 175.3 126 65.9
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 6.9e-42 174.9 125 66.4
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.2e-41 174.1 126 65.1
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.5e-41 173.7 126 62.7
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.2e-40 169.9 126 65.1
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 2.2e-40 169.9 126 62.7
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 5.5e-39 165.2 126 62.7
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 4.6e-38 162.2 126 57.1
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 4.6e-38 162.2 105 78.1
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 4.6e-38 162.2 105 78.1
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.3e-37 160.6 126 61.9
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 1.9e-36 156.8 126 61.1
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.3e-36 156.0 105 71.4
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.8e-35 152.1 105 69.5
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.0e-34 149.1 119 59.7
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.5e-33 147.1 105 66.7
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 8.4e-32 141.4 115 66.1
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 1.1e-31 141.0 125 54.4
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 5.5e-31 138.7 105 63.8
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.5e-31 138.7 125 54.4
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.5e-31 138.7 125 54.4
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.6e-30 137.1 126 54.0
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 3.9e-29 132.5 125 49.6
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 8.7e-29 131.3 126 52.4
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 6.3e-27 125.2 126 50.0
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 8.2e-27 124.8 125 48.8
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 3.1e-26 122.9 75 73.3
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 6.5e-24 115.2 129 45.7
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 9.3e-23 111.3 122 45.9
CSS0035646 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 2.7e-22 109.8 58 89.7
CSS0046266 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 2.7e-22 109.8 58 89.7
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 2.2e-19 100.1 134 41.8
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 4.1e-18 95.9 77 61.0
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.4e-15 87.4 125 39.2
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.4e-15 87.4 125 39.2
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 5.5e-15 85.5 131 38.9
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.6e-14 84.0 116 38.8
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 3.9e-13 79.3 76 53.9
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 1.7e-11 73.9 67 49.3
Actinidia39094 Actinidia chinensis HOM05D001027 ORTHO05D000844 8.2e-11 71.6 82 50.0
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 7.7e-09 65.1 41 78.0
Actinidia26042 Actinidia chinensis HOM05D001027 ORTHO05D000844 1.1e-07 61.2 66 48.5
Hma1.2p1_1128F.1_g259680 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 3.2e-07 59.7 68 51.5
QL05p009530 Quercus lobata HOM05D001027 ORTHO05D000844 1.6e-06 57.4 70 44.3
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 4.7e-06 55.8 62 40.3
Sed0000203 Sechium edule HOM05D001027 ORTHO05D000844 6.1e-06 55.5 70 41.4
ClCG07G013890 Citrullus lanatus HOM05D001027 ORTHO05D000844 7.9e-06 55.1 70 42.9


User provided reference genes

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