Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018456 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D021906 4.3e-65 251.1 123 100.0
CSS0006255 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D008563 4.7e-64 247.7 123 97.6
Dinv36436 Davidia involucrata HOM05D002800 ORTHO05D008563 6.9e-23 110.9 61 93.4
Rhsim09G0151400 Rhododendron simsii HOM05D002800 ORTHO05D008563 9.0e-23 110.5 61 91.8
Gohir.A10G205400 Gossypium hirsutum HOM05D002800 ORTHO05D008563 1.5e-22 109.8 61 91.8
Gohir.D10G213700 Gossypium hirsutum HOM05D002800 ORTHO05D008563 1.5e-22 109.8 61 91.8
Thecc.10G075100 Theobroma cacao HOM05D002800 ORTHO05D008563 2.6e-22 109.0 61 91.8
Gorai.011G239000 Gossypium raimondii HOM05D002800 ORTHO05D008563 3.4e-22 108.6 61 90.2
GSVIVG01016267001 Vitis vinifera HOM05D002800 ORTHO05D008563 3.4e-22 108.6 61 91.8
Duzib106G1770 Durio zibethinus HOM05D002800 ORTHO05D008563 7.6e-22 107.5 61 91.8
TAR369G0845 Trochodendron aralioides HOM05D002800 ORTHO05D008563 7.6e-22 107.5 61 90.2
Nn2g10811 Nelumbo nucifera HOM05D002800 ORTHO05D008563 2.2e-21 105.9 61 88.5
Hund20229 Selenicereus undatus HOM05D002800 ORTHO05D008563 5.0e-21 104.8 61 88.5
DCAR_006435 Daucus carota HOM05D002800 ORTHO05D008563 1.1e-20 103.6 61 86.9
Potri.008G039200 Populus trichocarpa HOM05D002800 ORTHO05D008563 1.9e-20 102.8 61 85.2
Sc09g0006270 Simmondsia chinensis HOM05D002800 ORTHO05D008563 1.9e-20 102.8 61 85.2
Cpa.g.sc53.86 Carica papaya HOM05D002800 ORTHO05D008563 2.5e-20 102.4 61 85.2
HanXRQChr14g0456851 Helianthus annuus HOM05D002800 ORTHO05D008563 2.5e-20 102.4 61 83.6
Atru.chr12.759 Acer truncatum HOM05D002800 ORTHO05D008563 4.2e-20 101.7 61 83.6
Potri.010G223000 Populus trichocarpa HOM05D002800 ORTHO05D008563 4.2e-20 101.7 61 83.6
Sabra10G0172400 Salix brachista HOM05D002800 ORTHO05D008563 4.2e-20 101.7 61 83.6
Atru.chr12.783 Acer truncatum HOM05D002800 ORTHO05D008563 5.5e-20 101.3 61 82.0
Actinidia32446 Actinidia chinensis HOM05D002800 ORTHO05D023340 5.5e-20 101.3 61 88.5
MBI07_g26016_MAGBIO Magnolia biondii HOM05D002800 ORTHO05D008563 5.5e-20 101.3 61 85.2
Ciclev10031045m.g Citrus clementina HOM05D002800 ORTHO05D008563 7.2e-20 100.9 61 80.3
Cc02_g11310 Coffea canephora HOM05D002800 ORTHO05D008563 1.2e-19 100.1 61 82.0
Migut.F01983 Erythranthe guttata HOM05D002800 ORTHO05D008563 1.2e-19 100.1 61 85.2
Eucgr.J01084 Eucalyptus grandis HOM05D002800 ORTHO05D008563 1.2e-19 100.1 61 85.2
Sabra08G0026900 Salix brachista HOM05D002800 ORTHO05D008563 1.2e-19 100.1 61 82.0
Os07g0447800 Oryza sativa ssp. japonica HOM05D002800 ORTHO05D008563 1.6e-19 99.8 61 82.0
Peaxi162Scf01011g00005 Petunia axillaris HOM05D002800 ORTHO05D008563 1.6e-19 99.8 61 83.6
Lsat_1_v5_gn_2_112341 Lactuca sativa HOM05D002800 ORTHO05D008563 2.1e-19 99.4 61 82.0
MD01G1108200 Malus domestica HOM05D002800 ORTHO05D008563 2.7e-19 99.0 61 77.0
Oeu031346.1 Olea europaea HOM05D002800 ORTHO05D008563 2.7e-19 99.0 61 85.2
Lj1C913T2 Lonicera japonica HOM05D002800 ORTHO05D008563 3.6e-19 98.6 61 83.6
SalBow4G0916 Salvia bowleyana HOM05D002800 ORTHO05D008563 3.6e-19 98.6 61 82.0
TWI15G0073 Tripterygium wilfordii HOM05D002800 ORTHO05D008563 3.6e-19 98.6 60 85.0
CANSAT56G2733 Cannabis sativa HOM05D002800 ORTHO05D008563 4.6e-19 98.2 61 80.3
AUR62006403 Chenopodium quinoa HOM05D002800 ORTHO05D008563 4.6e-19 98.2 61 82.0
Prupe.2G213100 Prunus persica HOM05D002800 ORTHO05D008563 4.6e-19 98.2 61 78.7
SGA_v2.0_scaffold42G16019 Striga asiatica HOM05D002800 ORTHO05D023340 6.1e-19 97.8 61 82.0
CAN.G839.3 Capsicum annuum HOM05D002800 ORTHO05D008563 7.9e-19 97.4 61 82.0
CiPaw.01G272300 Carya illinoinensis HOM05D002800 ORTHO05D008563 7.9e-19 97.4 61 82.0
ECA238G0500 Erigeron canadensis HOM05D002800 ORTHO05D008563 7.9e-19 97.4 61 80.3
EL10Ac7g17090 Beta vulgaris HOM05D002800 ORTHO05D008563 1.0e-18 97.1 61 78.7
CDE08G1164 Ceratophyllum demersum HOM05D002800 ORTHO05D008563 1.0e-18 97.1 61 83.6
Glyma.20G179900 Glycine max HOM05D002800 ORTHO05D008563 1.0e-18 97.1 61 82.0
Lalb_Chr02g0142211 Lupinus albus HOM05D002800 ORTHO05D008563 1.0e-18 97.1 61 82.0
Aqoxy1G01227 Aquilegia oxysepala HOM05D002800 ORTHO05D008563 1.4e-18 96.7 61 85.2
Haze_16886 Corylus avellana HOM05D002800 ORTHO05D008563 1.4e-18 96.7 61 82.0
MELO3C019799.2 Cucumis melo HOM05D002800 ORTHO05D008563 1.4e-18 96.7 61 82.0
QL08p055739 Quercus lobata HOM05D002800 ORTHO05D008563 1.4e-18 96.7 61 82.0
CsaV3_6G036460 Cucumis sativus L. HOM05D002800 ORTHO05D008563 3.9e-18 95.1 61 80.3
FAN10G1943 Fragaria x ananassa HOM05D002800 ORTHO05D008563 3.9e-18 95.1 61 82.0
FAN10G3729 Fragaria x ananassa HOM05D002800 ORTHO05D008563 3.9e-18 95.1 61 82.0
Nitab4.5_0002524g0030 Nicotiana tabacum HOM05D002800 ORTHO05D008563 3.9e-18 95.1 61 83.6
FvH4_7g19370 Fragaria vesca HOM05D002800 ORTHO05D008563 5.1e-18 94.7 61 82.0
PSO384G1174 Papaver somniferum HOM05D002800 ORTHO05D008563 5.1e-18 94.7 61 80.3
PGR044G1821 Punica granatum HOM05D002800 ORTHO05D008563 5.1e-18 94.7 61 83.6
Sed0015272 Sechium edule HOM05D002800 ORTHO05D008563 5.1e-18 94.7 61 78.7
Ah.08g209400 Amaranthus hybridus HOM05D002800 ORTHO05D008563 6.7e-18 94.4 61 80.3
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 6.7e-18 94.4 61 82.0
RcHm_v2.0_Chr1g0363251 Rosa chinensis HOM05D002800 ORTHO05D008563 6.7e-18 94.4 61 78.7
Lalb_Chr06g0162361 Lupinus albus HOM05D002800 ORTHO05D008563 8.8e-18 94.0 61 80.3
AagrBONN_evm.TU.Sc2ySwM_117.2596 Anthoceros agrestis HOM05D002800 ORTHO05D008563 1.1e-17 93.6 62 74.2
ClCG08G007530 Citrullus lanatus HOM05D002800 ORTHO05D008563 1.1e-17 93.6 61 78.7
Glyma.10G210700 Glycine max HOM05D002800 ORTHO05D008563 1.1e-17 93.6 61 80.3
arahy.Tifrunner.gnm1.ann1.681S5P Arachis hypogaea HOM05D002800 ORTHO05D008563 1.5e-17 93.2 61 77.0
arahy.Tifrunner.gnm1.ann1.KPC10E Arachis hypogaea HOM05D002800 ORTHO05D008563 1.5e-17 93.2 61 77.0
Lj5g0013059 Lotus japonicus HOM05D002800 ORTHO05D008563 1.9e-17 92.8 61 78.7
THA.LOC104799379 Tarenaya hassleriana HOM05D002800 ORTHO05D008563 1.9e-17 92.8 60 80.0
Mapoly0011s0106 Marchantia polymorpha HOM05D002800 ORTHO05D008563 2.5e-17 92.4 62 71.0
PGSC0003DMG400001912 Solanum tuberosum HOM05D002800 ORTHO05D008563 2.5e-17 92.4 61 80.3
FAN03G0883 Fragaria x ananassa HOM05D002800 ORTHO05D008563 3.3e-17 92.0 61 80.3
Nitab4.5_0001053g0090 Nicotiana tabacum HOM05D002800 ORTHO05D008563 3.3e-17 92.0 61 80.3
Psat6g183400 Pisum sativum HOM05D002800 ORTHO05D008563 3.3e-17 92.0 61 78.7
Solyc04g005030.4 Solanum lycopersicum HOM05D002800 ORTHO05D008563 4.3e-17 91.7 61 77.0
TPR.G1920 Trifolium pratense HOM05D002800 ORTHO05D008563 4.3e-17 91.7 61 77.0
VMungo0720G2543 Vigna mungo HOM05D002800 ORTHO05D008563 4.3e-17 91.7 61 75.4
FAN06G4795 Fragaria x ananassa HOM05D002800 ORTHO05D008563 5.7e-17 91.3 61 80.3
Medtr1g094980 Medicago truncatula HOM05D002800 ORTHO05D008563 7.4e-17 90.9 61 77.0
PSO339G3461 Papaver somniferum HOM05D002800 ORTHO05D008563 7.4e-17 90.9 61 77.0
ATR0048G007 Amborella trichopoda HOM05D002800 ORTHO05D008563 9.7e-17 90.5 61 77.0
Aa31sc262G50 Aethionema arabicum HOM05D002800 ORTHO05D008563 1.7e-16 89.7 60 80.0
Carub.0006s1576 Capsella rubella HOM05D002800 ORTHO05D008563 1.7e-16 89.7 60 80.0
AT5G17530 Arabidopsis thaliana HOM05D002800 ORTHO05D008563 2.2e-16 89.4 60 80.0
Thhalv10012819m.g Eutrema salsugineum HOM05D002800 ORTHO05D008563 3.7e-16 88.6 60 80.0
Phvul.007G094900 Phaseolus vulgaris HOM05D002800 ORTHO05D008563 3.7e-16 88.6 61 73.8
SHI08822 Sapria himalayana HOM05D002800 ORTHO05D008563 4.8e-16 88.2 84 54.8
Pp3c20_2120 Physcomitrium patens HOM05D002800 ORTHO05D008563 1.1e-15 87.0 62 72.6
CARHR195660 Cardamine hirsuta HOM05D002800 ORTHO05D008563 1.4e-15 86.7 73 65.8
AL6G28620 Arabidopsis lyrata HOM05D002800 ORTHO05D008563 2.4e-15 85.9 60 78.3
Sp6g26690 Schrenkiella parvula HOM05D002800 ORTHO05D008563 2.4e-15 85.9 60 78.3
BcaC03g13525 Brassica carinata HOM05D002800 ORTHO05D008563 9.1e-15 84.0 60 76.7
A02p04250 Brassica napus HOM05D002800 ORTHO05D008563 9.1e-15 84.0 60 76.7
C02p09130 Brassica napus HOM05D002800 ORTHO05D008563 9.1e-15 84.0 60 76.7
BolC2t06825H Brassica oleracea HOM05D002800 ORTHO05D008563 9.1e-15 84.0 60 76.7
BraA02t05388Z Brassica rapa HOM05D002800 ORTHO05D008563 9.1e-15 84.0 60 76.7
C05p49990 Brassica napus HOM05D002800 ORTHO05D021906 5.5e-12 74.7 56 73.2
Zm00001eb239330 Zea mays HOM05D064750 ORTHO05D036592 1.2e-11 73.6 53 75.5
SMO144G0140 Selaginella moellendorffii HOM05D002800 ORTHO05D008563 2.1e-11 72.8 61 68.9
EL10Ac1g01349 Beta vulgaris HOM05D003468 ORTHO05D002806 7.9e-11 70.9 47 74.5
EL10Ac7g17414 Beta vulgaris HOM05D000868 ORTHO05D000711 6.3e-08 61.2 41 73.2
BcaC05g28876 Brassica carinata HOM05D002800 ORTHO05D021906 1.2e-06 57.0 49 65.3
GSVIVG01011714001 Vitis vinifera HOM05D002800 ORTHO05D009276 2.6e-06 55.8 65 44.6
CSS0015131 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D009276 3.4e-06 55.5 60 46.7
CSS0030320 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D009276 3.4e-06 55.5 60 46.7
MCO09G500 Micromonas commoda HOM05D002800 ORTHO05D008563 3.4e-06 55.5 60 50.0
arahy.Tifrunner.gnm1.ann1.2KYQ06 Arachis hypogaea HOM05D002800 ORTHO05D009276 4.5e-06 55.1 63 46.0
Nitab4.5_0000135g0080 Nicotiana tabacum HOM05D002800 ORTHO05D009276 5.9e-06 54.7 60 46.7
arahy.Tifrunner.gnm1.ann1.RI7QVZ Arachis hypogaea HOM05D002800 ORTHO05D009276 7.7e-06 54.3 63 46.0


User provided reference genes

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