Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 5.3e-67 258.1 187 100.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 2.4e-51 206.1 189 77.8
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 4.4e-45 185.3 187 78.6
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.3e-44 183.7 187 75.9
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.4e-43 180.3 187 74.3
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 2.4e-43 179.5 181 79.0
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 2.4e-43 179.5 193 78.8
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 3.1e-43 179.1 193 76.7
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 7.0e-43 177.9 183 79.8
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 9.1e-43 177.6 194 71.6
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.2e-42 177.2 189 79.4
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.5e-42 175.3 183 78.7
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 5.9e-42 174.9 183 79.2
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.0e-41 174.1 187 69.5
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.7e-41 173.3 197 75.1
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.1e-40 170.6 179 80.4
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 1.1e-40 170.6 194 68.6
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.1e-40 170.6 192 64.6
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.1e-40 170.6 192 57.8
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.1e-40 170.6 194 68.0
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 7.2e-40 167.9 200 66.0
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 7.2e-40 167.9 197 74.1
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 9.5e-40 167.5 182 73.6
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 4.7e-39 165.2 189 66.7
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 4.7e-39 165.2 181 77.3
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 1.0e-38 164.1 207 70.5
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.2e-37 160.6 185 58.9
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 5.7e-37 158.3 97 82.5
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 7.5e-37 157.9 202 64.9
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.7e-36 156.8 95 83.2
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.7e-36 155.6 187 59.4
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.1e-35 154.1 95 82.1
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.4e-35 153.7 97 79.4
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.4e-35 153.7 192 68.2
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.4e-35 152.9 181 54.7
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 4.1e-35 152.1 182 65.9
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 9.2e-35 151.0 97 78.4
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 1.6e-34 150.2 189 58.2
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.6e-34 150.2 191 67.5
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 3.5e-34 149.1 97 75.3
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 4.6e-34 148.7 97 75.3
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 4.6e-34 148.7 97 77.3
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 4.6e-34 148.7 97 77.3
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.6e-34 148.7 97 77.3
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 4.6e-34 148.7 192 66.1
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 5.9e-34 148.3 199 66.8
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 5.9e-34 148.3 97 75.3
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 5.9e-34 148.3 97 76.3
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 7.8e-34 147.9 95 77.9
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 3.0e-33 146.0 194 66.0
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 3.9e-33 145.6 174 72.4
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 6.6e-33 144.8 241 57.7
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 8.6e-33 144.4 197 71.1
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 8.6e-33 144.4 185 55.7
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.1e-32 144.1 95 76.8
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.1e-32 144.1 200 69.0
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.5e-32 143.7 95 74.7
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.9e-32 143.3 97 72.2
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 4.3e-32 142.1 98 73.5
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 7.3e-32 141.4 95 72.6
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 7.3e-32 141.4 190 64.2
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 9.5e-32 141.0 210 69.0
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 1.2e-31 140.6 87 81.6
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.8e-31 139.4 96 74.0
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 4.7e-31 138.7 98 71.4
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 4.7e-31 138.7 97 71.1
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 6.2e-31 138.3 96 72.9
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 1.0e-30 137.5 98 70.4
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 3.1e-30 136.0 92 73.9
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.2e-29 134.0 92 72.8
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.5e-29 133.7 87 79.3
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 4.4e-29 132.1 86 75.6
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 7.5e-29 131.3 90 70.0
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.7e-28 130.2 95 68.4
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.2e-28 129.8 87 75.9
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 2.9e-28 129.4 95 67.4
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.4e-28 128.3 163 54.6
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 8.3e-28 127.9 91 65.9
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-27 127.5 163 63.2
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.4e-27 126.3 247 48.6
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 2.4e-27 126.3 77 83.1
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 4.1e-27 125.6 84 75.0
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 7.0e-27 124.8 87 72.4
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 4.6e-26 122.1 98 69.4
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.0e-25 120.9 188 42.0
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 2.3e-25 119.8 96 63.5
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 2.3e-25 119.8 222 57.2
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.9e-24 116.7 96 67.7
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 4.3e-24 115.5 96 58.3
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 4.3e-24 115.5 79 74.7
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 4.3e-24 115.5 96 58.3
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 4.3e-24 115.5 96 58.3
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 4.7e-23 112.1 77 71.4
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 6.2e-23 111.7 92 57.6
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 6.2e-23 111.7 92 57.6
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 3.1e-22 109.4 98 59.2
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.6e-21 106.3 159 50.9
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 4.4e-21 105.5 156 65.4
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 9.8e-21 104.4 86 60.5
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-19 100.9 88 64.8
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-19 100.9 88 64.8
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.4e-19 99.8 94 54.3
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 3.2e-19 99.4 81 67.9
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 5.4e-19 98.6 79 72.2
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.6e-18 97.1 78 69.2
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 2.1e-18 96.7 89 57.3
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 2.1e-18 96.7 188 60.6
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 3.0e-17 92.8 79 69.6
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 2.5e-16 89.7 95 52.6
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.4e-14 84.0 97 49.5
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 5.2e-14 82.0 89 48.3
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 5.2e-14 82.0 56 71.4
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 6.8e-14 81.6 57 71.9
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 8.9e-14 81.3 78 53.8
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 7.6e-13 78.2 88 54.5
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 4.9e-12 75.5 130 77.7
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.4e-11 73.9 86 50.0
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 2.3e-09 66.6 68 52.9
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.5e-08 63.2 91 44.0
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 9.6e-08 61.2 39 79.5
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 1.8e-06 57.0 93 34.4
SalBow6G4228 Salvia bowleyana HOM05D006504 ORTHO05D007867 2.4e-06 56.6 37 70.3
SalBow6G4685 Salvia bowleyana HOM05D006504 ORTHO05D007867 2.4e-06 56.6 37 70.3
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 3.1e-06 56.2 43 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 6.8e-06 55.1 57 45.6
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 8.9e-06 54.7 66 42.4
unitig_748.g8021 Utricularia gibba HOM05D000360 ORTHO05D000234 8.9e-06 54.7 40 65.0


User provided reference genes

Program Settings