Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 6.1e-146 520.8 261 100.0
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.8e-145 519.2 261 99.6
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 1.1e-105 387.1 264 79.9
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 4.9e-103 378.3 261 75.9
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 8.4e-103 377.5 260 74.6
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.2e-101 373.6 308 68.8
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.9e-100 368.6 268 72.0
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 6.7e-100 367.9 270 70.4
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 3.3e-99 365.5 259 71.0
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 3.3e-99 365.5 264 72.7
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.3e-99 365.2 259 71.0
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 5.6e-99 364.8 267 72.3
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 8.1e-98 360.9 252 73.4
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.8e-97 359.8 244 74.6
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.8e-97 359.8 241 75.1
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.4e-97 359.4 252 73.4
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 6.9e-97 357.8 252 73.0
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.2e-96 357.1 265 69.4
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.6e-96 355.9 187 92.5
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 7.6e-96 354.4 254 72.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 1.0e-95 354.0 216 81.5
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 2.9e-95 352.4 262 71.8
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 3.8e-95 352.1 269 68.0
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 6.5e-95 351.3 287 65.5
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.4e-94 350.1 263 71.9
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 5.5e-94 348.2 249 72.3
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.2e-93 347.1 242 71.9
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.2e-93 347.1 269 69.9
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 4.6e-93 345.1 268 68.3
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 7.9e-93 344.4 246 71.5
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 2.3e-92 342.8 226 80.1
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 3.0e-92 342.4 263 70.7
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 8.7e-92 340.9 246 72.8
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.1e-91 340.5 268 70.1
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 1.5e-91 340.1 258 70.5
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.9e-91 339.7 246 72.4
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 3.3e-91 339.0 271 68.3
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 3.3e-91 339.0 254 70.5
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 4.3e-91 338.6 261 69.3
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 1.3e-90 337.0 265 68.3
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.1e-89 334.0 259 68.7
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.4e-89 333.6 262 67.2
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 5.3e-89 331.6 247 68.8
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 6.9e-89 331.3 276 64.5
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 6.9e-89 331.3 264 68.2
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 9.0e-89 330.9 255 69.0
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.2e-88 330.5 278 64.0
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 1.5e-88 330.1 279 63.4
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 2.6e-88 329.3 245 69.4
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.4e-88 328.9 273 65.6
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.3e-87 327.0 258 65.9
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.3e-87 327.0 247 72.1
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 2.2e-87 326.2 262 67.2
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 4.2e-86 322.0 225 74.2
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 7.2e-86 321.2 220 72.7
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.1e-85 319.7 260 68.1
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.7e-85 319.3 262 67.6
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.3e-84 316.2 273 64.1
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 3.9e-84 315.5 262 64.9
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.1e-83 313.9 277 63.2
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.5e-83 313.5 220 71.4
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.5e-83 312.8 288 61.5
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 4.3e-83 312.0 266 66.2
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 9.7e-83 310.8 266 65.8
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 4.1e-81 305.4 267 61.8
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 3.4e-80 302.4 252 62.7
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 2.2e-79 299.7 229 69.9
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 2.9e-79 299.3 229 70.7
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.2e-78 295.4 247 66.4
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 7.2e-78 294.7 281 61.6
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.7e-77 292.7 250 65.6
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 3.9e-76 288.9 280 60.4
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.5e-75 286.2 250 64.8
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 2.0e-72 276.6 257 59.5
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 3.8e-71 272.3 254 60.6
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 3.8e-71 272.3 264 61.7
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.4e-70 270.4 245 61.6
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 5.5e-70 268.5 270 59.3
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 5.5e-70 268.5 262 59.9
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 3.6e-69 265.8 226 64.6
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.4e-68 263.8 216 62.0
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.0e-68 262.7 271 56.1
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 8.8e-68 261.2 271 55.4
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 5.3e-65 251.9 253 57.7
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.2e-64 250.8 250 57.6
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.3e-63 247.3 419 42.0
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.7e-63 246.9 186 69.4
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.2e-63 246.5 255 56.5
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 8.5e-63 244.6 183 68.9
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.2e-61 240.7 266 55.6
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.7e-61 239.6 211 60.2
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 2.7e-61 239.6 192 65.6
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.7e-61 239.6 210 61.9
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.4e-60 237.3 204 61.3
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 5.2e-60 235.3 269 54.6
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 4.4e-59 232.3 259 55.6
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 9.7e-59 231.1 180 68.9
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.7e-58 230.3 271 52.8
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 2.2e-58 229.9 264 54.5
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.8e-57 226.9 184 62.5
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.3e-57 225.3 242 55.4
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 5.0e-55 218.8 267 52.8
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 5.0e-55 218.8 267 52.8
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.5e-54 216.5 242 53.7
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 1.2e-53 214.2 269 49.8
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 1.2e-53 214.2 269 49.8
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 1.2e-53 214.2 269 49.8
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.8e-52 208.4 249 51.8
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 3.7e-50 202.6 248 50.0
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 5.9e-48 195.3 246 49.6
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.7e-47 193.7 309 45.6
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 2.2e-47 193.4 276 45.3
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 6.1e-45 185.3 251 49.4
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.0e-44 184.5 255 48.2
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 4.4e-43 179.1 236 51.3
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 9.8e-43 177.9 216 49.5
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 8.9e-36 154.8 153 57.5
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.3e-30 136.3 190 46.8
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.6e-30 135.6 126 61.9
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 3.6e-29 132.9 191 44.5
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.1e-28 129.8 207 44.4
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 5.0e-23 112.5 214 42.5
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 4.3e-22 109.4 201 38.8
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.1e-20 104.8 76 68.4
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 3.5e-16 89.7 97 56.7
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.3e-15 87.0 134 47.8
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.1e-14 84.7 77 58.4
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.1e-14 84.7 71 63.4
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 2.0e-11 73.9 53 64.2
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.9e-10 70.1 74 55.4
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 1.6e-08 64.3 50 62.0
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 2.3e-07 60.5 45 62.2
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 6.6e-07 58.9 45 62.2
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 8.6e-07 58.5 260 26.5


User provided reference genes

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