Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018399 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.1e-90 336.7 168 100.0
CSS0025945 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 9.9e-89 330.1 168 98.2
CSS0015510 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.3e-68 261.5 132 100.0
CSS0014057 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.2e-65 253.4 132 97.0
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.4e-65 251.9 131 96.9
CSS0015957 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.4e-65 251.9 131 96.9
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 1.6e-54 216.5 130 83.8
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 1.6e-54 216.5 131 82.4
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 2.7e-54 215.7 128 84.4
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 1.1e-52 210.3 130 80.0
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 3.7e-51 205.3 131 78.6
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 2.4e-50 202.6 131 77.9
CiPaw.13G071900 Carya illinoinensis HOM05D002034 ORTHO05D004251 4.1e-50 201.8 164 65.2
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 3.4e-49 198.7 131 76.3
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 3.4e-49 198.7 124 79.0
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 7.7e-49 197.6 124 79.0
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 1.3e-48 196.8 124 77.4
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 3.2e-47 192.2 128 75.8
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 3.2e-47 192.2 124 75.0
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 5.5e-47 191.4 124 75.8
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 2.7e-46 189.1 124 76.6
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 2.7e-46 189.1 124 74.2
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 2.7e-46 189.1 128 70.3
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 3.6e-46 188.7 124 73.4
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 3.6e-46 188.7 128 73.4
Cpa.g.sc2.385 Carica papaya HOM05D002034 ORTHO05D004251 6.1e-46 188.0 124 73.4
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 6.1e-46 188.0 128 71.9
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 6.1e-46 188.0 124 75.0
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 7.9e-46 187.6 124 73.4
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 1.0e-45 187.2 124 72.6
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 1.4e-45 186.8 135 71.9
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.3e-45 186.0 131 68.7
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 3.3e-44 182.2 128 71.1
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 4.4e-44 181.8 123 73.2
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 4.4e-44 181.8 123 73.2
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 7.4e-44 181.0 128 70.3
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 7.4e-44 181.0 128 70.3
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 9.7e-44 180.6 123 74.0
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 1.3e-43 180.3 124 73.4
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 1.3e-43 180.3 123 72.4
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 1.7e-43 179.9 121 72.7
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 1.7e-43 179.9 124 68.5
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 2.8e-43 179.1 124 72.6
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 2.8e-43 179.1 124 72.6
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 3.7e-43 178.7 131 68.7
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.7e-43 178.7 123 71.5
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.7e-43 178.7 124 71.8
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.7e-43 178.7 123 71.5
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 3.7e-43 178.7 128 68.0
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 3.7e-43 178.7 125 71.2
Peaxi162Scf00808g00011 Petunia axillaris HOM05D002034 ORTHO05D004251 4.8e-43 178.3 127 66.9
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 6.3e-43 177.9 125 72.0
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 8.2e-43 177.6 130 65.4
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 8.2e-43 177.6 123 72.4
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 1.1e-42 177.2 128 67.2
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 3.1e-42 175.6 125 68.8
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 4.1e-42 175.3 135 62.2
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 5.3e-42 174.9 128 66.4
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 7.0e-42 174.5 129 65.1
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 7.0e-42 174.5 128 67.2
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 7.0e-42 174.5 128 67.2
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 7.0e-42 174.5 128 67.2
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 1.6e-41 173.3 137 64.2
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.6e-41 173.3 125 67.2
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 1.6e-41 173.3 129 67.4
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 2.0e-41 172.9 130 65.4
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 2.6e-41 172.6 123 69.9
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 2.6e-41 172.6 129 67.4
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 3.5e-41 172.2 123 69.9
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 7.7e-41 171.0 127 63.8
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 1.0e-40 170.6 134 61.9
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 1.3e-40 170.2 131 66.4
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.2e-40 169.5 125 65.6
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 3.8e-40 168.7 128 64.8
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 3.8e-40 168.7 126 65.9
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 3.8e-40 168.7 124 67.7
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 6.5e-40 167.9 129 65.1
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 8.5e-40 167.5 125 65.6
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 1.5e-39 166.8 121 67.8
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 3.2e-39 165.6 131 62.6
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 4.2e-39 165.2 121 68.6
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 7.2e-39 164.5 121 66.9
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 7.2e-39 164.5 121 66.9
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 9.4e-39 164.1 127 66.1
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 2.1e-38 162.9 121 66.9
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 2.1e-38 162.9 123 68.3
Lj1C128T10 Lonicera japonica HOM05D002034 ORTHO05D004251 2.1e-38 162.9 177 53.7
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.7e-38 161.8 135 62.2
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 4.7e-38 161.8 123 68.3
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 6.1e-38 161.4 125 64.8
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 6.1e-38 161.4 122 67.2
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 1.4e-37 160.2 128 61.7
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 1.8e-37 159.8 121 64.5
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 2.3e-37 159.5 121 64.5
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 2.3e-37 159.5 121 64.5
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 2.3e-37 159.5 121 64.5
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 3.0e-37 159.1 121 64.5
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 3.0e-37 159.1 121 64.5
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 4.0e-37 158.7 121 64.5
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 4.0e-37 158.7 122 63.9
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 2.6e-36 156.0 124 62.1
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 2.6e-36 156.0 120 65.0
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 4.4e-36 155.2 130 60.8
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 4.4e-36 155.2 127 59.8
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 1.4e-34 150.2 123 64.2
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 1.4e-34 150.2 122 61.5
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 7.0e-34 147.9 131 57.3
HPP92_012002 Vanilla planifolia HOM05D002034 ORTHO05D004251 7.0e-34 147.9 124 60.5
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 3.5e-33 145.6 130 62.3
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 4.5e-33 145.2 125 59.2
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 7.7e-33 144.4 121 62.8
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.7e-32 143.3 120 60.8
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 3.8e-32 142.1 121 59.5
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 3.8e-32 142.1 124 59.7
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 3.8e-32 142.1 124 59.7
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 6.1e-30 134.8 166 47.0
SEGI_18638 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 8.0e-30 134.4 116 59.5
Lsat_1_v5_gn_1_27560 Lactuca sativa HOM05D003637 ORTHO05D004175 2.4e-26 122.9 85 72.9
Lsat_1_v5_gn_7_60281 Lactuca sativa HOM05D003637 ORTHO05D004175 3.1e-26 122.5 87 71.3
Cfa011749 Carpinus fangiana HOM05D002034 ORTHO05D004251 9.1e-26 120.9 88 69.3
Lsat_1_v5_gn_6_48181 Lactuca sativa HOM05D002034 ORTHO05D004251 1.6e-25 120.2 87 70.1
Lsat_1_v5_gn_3_43881 Lactuca sativa HOM05D002034 ORTHO05D004251 2.0e-25 119.8 92 67.4
Actinidia32621 Actinidia chinensis HOM05D002034 ORTHO05D004251 6.5e-24 114.8 131 53.4
Potri.001G280900 Populus trichocarpa HOM05D002034 ORTHO05D004251 9.4e-23 110.9 79 69.6
Lsat_1_v5_gn_1_24841 Lactuca sativa HOM05D002034 ORTHO05D004251 5.2e-21 105.1 75 70.7
Lsat_1_v5_gn_6_80801 Lactuca sativa HOM05D002034 ORTHO05D004251 8.3e-19 97.8 75 68.0
FAN21G1045 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.9e-16 89.4 60 70.0
TAR209G0006 Trochodendron aralioides HOM05D002034 ORTHO05D004251 9.5e-15 84.3 71 60.6
Lsat_1_v5_gn_3_57620 Lactuca sativa HOM05D003637 ORTHO05D004175 3.6e-14 82.4 55 74.5
Lsat_1_v5_gn_9_54560 Lactuca sativa HOM05D002034 ORTHO05D004251 1.2e-12 77.4 55 69.1
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 7.0e-10 68.2 116 39.7
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 9.2e-10 67.8 119 35.3
CDE12G0844 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 2.0e-09 66.6 44 70.5
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 3.9e-08 62.4 121 32.2
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 1.5e-07 60.5 117 34.2
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 7.3e-07 58.2 117 34.2
Oeu060884.1 Olea europaea HOM05D002034 ORTHO05D004251 3.6e-06 55.8 97 38.1


User provided reference genes

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