Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018376 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 4.8e-42 174.5 115 100.0
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 5.5e-38 161.0 116 74.1
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.5e-27 126.3 116 62.9
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 6.5e-23 110.9 112 55.4
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 5.5e-22 107.8 116 49.1
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 5.5e-22 107.8 113 61.1
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 7.2e-22 107.5 116 50.0
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 1.2e-21 106.7 113 50.4
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 1.6e-21 106.3 107 51.4
Actinidia08802 Actinidia chinensis HOM05D004379 ORTHO05D005186 2.7e-21 105.5 115 52.2
Rhsim08G0213700 Rhododendron simsii HOM05D004379 ORTHO05D005186 3.5e-21 105.1 118 56.8
Actinidia15991 Actinidia chinensis HOM05D004379 ORTHO05D005186 1.8e-20 102.8 113 51.3
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.8e-20 102.8 116 49.1
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 5.1e-20 101.3 120 50.0
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 1.1e-19 100.1 112 48.2
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 7.4e-19 97.4 112 50.0
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 9.7e-19 97.1 119 45.4
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 9.7e-19 97.1 112 46.4
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 3.7e-18 95.1 110 50.9
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 6.3e-18 94.4 107 47.7
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 8.2e-18 94.0 112 49.1
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 1.1e-17 93.6 112 45.5
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 1.4e-17 93.2 108 47.2
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 2.4e-17 92.4 110 51.8
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 3.1e-17 92.0 108 50.0
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 3.1e-17 92.0 112 47.3
EL10Ac9g21909 Beta vulgaris HOM05D004379 ORTHO05D005186 4.1e-17 91.7 116 44.0
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 5.3e-17 91.3 122 48.4
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 5.3e-17 91.3 122 48.4
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 5.3e-17 91.3 112 46.4
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 6.9e-17 90.9 113 47.8
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 9.0e-17 90.5 122 48.4
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 9.0e-17 90.5 122 48.4
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.2e-16 90.1 111 45.9
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.2e-16 90.1 122 48.4
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 1.5e-16 89.7 106 48.1
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 1.5e-16 89.7 120 47.5
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.0e-16 89.4 121 47.9
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 2.0e-16 89.4 111 48.6
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 3.4e-16 88.6 116 46.6
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 3.4e-16 88.6 115 47.0
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 7.7e-16 87.4 121 42.1
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 7.7e-16 87.4 96 51.0
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 7.7e-16 87.4 111 45.9
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 7.7e-16 87.4 108 44.4
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 1.0e-15 87.0 115 46.1
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 1.0e-15 87.0 115 46.1
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 2.2e-15 85.9 112 42.0
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 2.9e-15 85.5 114 45.6
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 2.9e-15 85.5 115 47.0
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 2.9e-15 85.5 104 47.1
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 3.8e-15 85.1 121 44.6
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 5.0e-15 84.7 106 42.5
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 5.0e-15 84.7 121 43.0
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 6.5e-15 84.3 105 44.8
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 8.5e-15 84.0 112 45.5
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 8.5e-15 84.0 109 44.0
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 8.5e-15 84.0 104 44.2
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 1.1e-14 83.6 112 42.0
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 1.1e-14 83.6 111 62.2
COL.COLO4_18855 Corchorus olitorius HOM05D004379 ORTHO05D005186 1.4e-14 83.2 113 42.5
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 2.5e-14 82.4 115 43.5
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 2.5e-14 82.4 118 42.4
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 3.2e-14 82.0 116 44.0
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 3.2e-14 82.0 116 44.0
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 4.2e-14 81.6 116 41.4
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 5.5e-14 81.3 100 43.0
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 5.5e-14 81.3 115 42.6
Phvul.003G165600 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 5.5e-14 81.3 104 46.2
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 7.2e-14 80.9 113 43.4
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 1.2e-13 80.1 122 44.3
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 1.2e-13 80.1 114 41.2
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.6e-13 79.7 88 47.7
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 2.7e-13 79.0 115 40.9
ClCG09G002880 Citrullus lanatus HOM05D004379 ORTHO05D005186 3.6e-13 78.6 105 41.9
MELO3C029250.2 Cucumis melo HOM05D004379 ORTHO05D005186 3.6e-13 78.6 114 42.1
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 4.6e-13 78.2 115 40.9
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 7.9e-13 77.4 78 50.0
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 7.9e-13 77.4 116 40.5
DCAR_025508 Daucus carota HOM05D004379 ORTHO05D005186 1.0e-12 77.0 77 76.6
Migut.D01070 Erythranthe guttata HOM05D004379 ORTHO05D005186 1.0e-12 77.0 126 42.1
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 1.4e-12 76.6 106 40.6
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 1.8e-12 76.3 104 43.3
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 1.8e-12 76.3 110 41.8
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 2.3e-12 75.9 106 39.6
Lj4g0010177 Lotus japonicus HOM05D004379 ORTHO05D005186 3.0e-12 75.5 111 41.4
Thecc.09G025200 Theobroma cacao HOM05D004379 ORTHO05D005186 3.0e-12 75.5 116 42.2
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 5.1e-12 74.7 106 43.4
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 5.1e-12 74.7 106 43.4
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 5.1e-12 74.7 106 43.4
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 5.1e-12 74.7 106 43.4
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 6.7e-12 74.3 71 52.1
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 6.7e-12 74.3 106 42.5
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 6.7e-12 74.3 78 48.7
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 1.1e-11 73.6 109 38.5
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 1.1e-11 73.6 109 38.5
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 1.1e-11 73.6 105 40.0
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 1.1e-11 73.6 102 40.2
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 1.5e-11 73.2 68 51.5
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 1.5e-11 73.2 99 45.5
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 1.5e-11 73.2 112 40.2
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 1.5e-11 73.2 117 38.5
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 2.0e-11 72.8 103 42.7
Sed0020577 Sechium edule HOM05D004379 ORTHO05D005186 2.0e-11 72.8 115 38.3
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 2.5e-11 72.4 110 41.8
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 4.3e-11 71.6 83 43.4
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 7.4e-11 70.9 113 38.1
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 1.3e-10 70.1 115 38.3
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 1.3e-10 70.1 69 49.3
Ciclev10010462m.g Citrus clementina HOM05D004379 ORTHO05D005186 1.7e-10 69.7 81 65.4
Lalb_Chr04g0262391 Lupinus albus HOM05D004379 ORTHO05D005186 1.7e-10 69.7 69 56.5
MSTRG.9427 Avicennia marina HOM05D004379 ORTHO05D005186 2.2e-10 69.3 94 46.8
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 2.2e-10 69.3 103 38.8
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 2.2e-10 69.3 71 50.7
Sed0016032 Sechium edule HOM05D004379 ORTHO05D005186 2.2e-10 69.3 93 38.7
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 2.8e-10 68.9 115 40.0
TWI75G1822 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 2.8e-10 68.9 61 52.5
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 3.7e-10 68.6 115 38.3
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 6.3e-10 67.8 104 39.4
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 6.3e-10 67.8 106 40.6
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 8.2e-10 67.4 109 39.4
Lalb_Chr12g0197991 Lupinus albus HOM05D004379 ORTHO05D005186 8.2e-10 67.4 71 46.5
PSO724G0030 Papaver somniferum HOM05D004379 ORTHO05D005186 8.2e-10 67.4 105 36.2
Eucgr.L02713 Eucalyptus grandis HOM05D004379 ORTHO05D005186 1.1e-09 67.0 122 32.8
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 1.1e-09 67.0 117 35.9
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 1.1e-09 67.0 67 49.3
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 1.1e-09 67.0 104 36.5
TPR.G37291 Trifolium pratense HOM05D004379 ORTHO05D005186 1.1e-09 67.0 74 54.1
Solyc07g008205.1 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.4e-09 66.6 115 35.7
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 1.4e-09 66.6 69 49.3
Peaxi162Scf00332g00733 Petunia axillaris HOM05D004379 ORTHO05D005186 1.8e-09 66.2 62 54.8
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 3.1e-09 65.5 74 43.2
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 4.1e-09 65.1 107 39.3
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 5.3e-09 64.7 122 32.0
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 6.9e-09 64.3 107 39.3
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 1.2e-08 63.5 82 39.0
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 1.2e-08 63.5 104 39.4
Nitab4.5_0005728g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 2.0e-08 62.8 72 50.0
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 2.6e-08 62.4 103 38.8
unitig_744.g24019 Utricularia gibba HOM05D004379 ORTHO05D005186 2.6e-08 62.4 101 44.6
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 3.4e-08 62.0 75 41.3
Ciclev10010639m.g Citrus clementina HOM05D004379 ORTHO05D005186 4.5e-08 61.6 73 43.8
Nitab4.5_0006708g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 5.9e-08 61.2 118 33.1
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 7.7e-08 60.8 78 39.7
Nitab4.5_0000209g0140 Nicotiana tabacum HOM05D004379 ORTHO05D005186 7.7e-08 60.8 114 36.0
Solyc03g116650.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.3e-07 60.1 115 37.4
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 2.2e-07 59.3 71 53.5
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 8.5e-07 57.4 115 30.4
Solyc08g015940.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 8.5e-07 57.4 66 43.9
PGSC0003DMG401021955 Solanum tuberosum HOM05D004379 ORTHO05D005186 2.5e-06 55.8 116 33.6
Nitab4.5_0001597g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 4.2e-06 55.1 73 38.4
Nitab4.5_0007034g0030 Nicotiana tabacum HOM05D001011 ORTHO05D000851 7.2e-06 54.3 59 47.5


User provided reference genes

Program Settings